ENSDARG00000061478


Danio rerio

Features
Gene ID: ENSDARG00000061478
  
Biological name :igf2bp1
  
Synonyms : igf2bp1 / insulin-like growth factor 2 mRNA binding protein 1
  
Possible biological names infered from orthology : O88477 / Q9NZI8
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 23518137
Gene end: 23575115
  
Corresponding Affymetrix probe sets: Dr.1691.2.S1_at (Zebrafish Array)   Dr.25678.4.S1_at (Zebrafish Array)   Dr.9189.1.A1_at (Zebrafish Array)   NM_001076559_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000127796
Ensembl peptide - ENSDARP00000143837
Ensembl peptide - ENSDARP00000082159
NCBI entrez gene - 558182     See in Manteia.
RefSeq - NM_001076559
RefSeq Peptide - NP_001070027
swissprot - A0A0B4J1A6
swissprot - X1WC53
ZFIN ID - ZDB-GENE-060929-1258
Ensembl - ENSDARG00000061478
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 O42254ENSGALG00000041204Gallus gallus
 Q9NZI8ENSG00000159217Homo sapiens
 O88477ENSMUSG00000013415Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9PW80 / igf2bp3 / insulin-like growth factor 2 mRNA binding protein 3 / O00425* / Q9CPN8*ENSDARG0000001026669
igf2bp2a / insulin-like growth factor 2 mRNA binding protein 2a / Q9Y6M1* / Q5SF07* / IGF2BP2* / insulin like growth factor 2 mRNA binding protein 2*ENSDARG0000000342166
igf2bp2b / insulin-like growth factor 2 mRNA binding protein 2b / Q9Y6M1* / Q5SF07* / IGF2BP2* / insulin like growth factor 2 mRNA binding protein 2*ENSDARG0000009975845


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR034837  IGF2BP1, RNA recognition motif 1
 IPR034842  IGF2BP1, RNA recognition motif 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000024 retinal ganglion cell layer retinal ganglion cell layer decreased thickness , abnormal
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 ZFA:0000152 retina retina apoptotic process increased occurrence , abnormal
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 ZFA:0000445 optic tectum optic tectum has fewer parts of type retinal ganglion cell axon terminus, abnormal
optic tectum innervation decreased occurrence , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr