ENSDARG00000063573


Danio rerio

Features
Gene ID: ENSDARG00000063573
  
Biological name :vps41
  
Synonyms : vacuolar protein sorting 41 homolog (S. cerevisiae) / vps41
  
Possible biological names infered from orthology : P49754 / Q5KU39 / VPS41, HOPS complex subunit
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 9895851
Gene end: 9960316
  
Corresponding Affymetrix probe sets: Dr.101.1.A1_at (Zebrafish Array)   XM_686579_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000116849
Ensembl peptide - ENSDARP00000144910
Ensembl peptide - ENSDARP00000120107
Ensembl peptide - ENSDARP00000087407
NCBI entrez gene - 563215     See in Manteia.
RefSeq - XM_686579
swissprot - E9QF68
swissprot - E7F590
swissprot - F1QD69
ZFIN ID - ZDB-GENE-030131-6671
Ensembl - ENSDARG00000063573
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS41ENSGALG00000031635Gallus gallus
 VPS41ENSG00000006715Homo sapiens
 Vps41ENSMUSG00000041236Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000547  Clathrin, heavy chain/VPS, 7-fold repeat
 IPR001841  Zinc finger, RING-type
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016902  Vacuolar protein sorting-associated protein 41
 IPR017986  WD40-repeat-containing domain
 IPR019453  Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006623 protein targeting to vacuole IBA
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0035542 regulation of SNARE complex assembly IBA
 biological_processGO:0042144 vacuole fusion, non-autophagic IBA
 biological_processGO:0046907 intracellular transport IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005770 late endosome IBA
 cellular_componentGO:0030897 HOPS complex IBA
 cellular_componentGO:0033263 CORVET complex IBA
 molecular_functionGO:0051020 GTPase binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr