ENSDARG00000068874


Danio rerio

Features
Gene ID: ENSDARG00000068874
  
Biological name :si:ch211-250m6.7
  
Synonyms : si:ch211-250m6.7
  
Possible biological names infered from orthology : patched domain containing 3 / PTCHD3 / Q0EEE2 / Q3KNS1
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 77620775
Gene end: 77624155
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000090534
swissprot - F1QRU8
ZFIN ID - ZDB-GENE-041210-239
Ensembl - ENSDARG00000068874
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTCHD3ENSGALG00000023347Gallus gallus
 PTCHD3ENSG00000182077Homo sapiens
 Ptchd3ENSMUSG00000039198Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CR792422.1 / PTCHD3* / Q3KNS1* / patched domain containing 3*ENSDARG0000001007539
ptchd1 / patched domain containing 1 / Q14B62* / Q96NR3* / Patched domain-containing protein 1 *ENSDARG0000001806627
ptchd4 / Q5RIV7 / patched domain containing 4 / Q6ZW05* / Mus musculus patched domain containing 4 (Ptchd4), transcript variant 1, mRNA.*ENSDARG0000000824923
npc1 / Niemann-Pick disease, type C1 / O15118* / O35604* / Niemann-Pick C1 protein * / NPC intracellular cholesterol transporter 1*ENSDARG0000001718023
ptch1 / patched 1 / Q13635* / Q61115* / Mus musculus patched 1 (Ptch1), transcript variant 2, mRNA.*ENSDARG0000001640420
ptch2 / patched 2 / 2 * / O35595* / Q9Y6C5*ENSDARG0000005502620
NPC1L1 / NPC1 like intracellular cholesterol transporter 1 / Q9UHC9*ENSDARG0000009955814
ptch1 / patched 1 / Q13635* / Q61115* / Mus musculus patched 1 (Ptch1), transcript variant 2, mRNA.*ENSDARG000000958591


Protein motifs (from Interpro)
Interpro ID Name
 IPR000731  Sterol-sensing domain
 IPR003392  Protein patched/dispatched


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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