ENSDARG00000070339


Danio rerio

Features
Gene ID: ENSDARG00000070339
  
Biological name :hoxc3a
  
Synonyms : homeobox C3a / hoxc3a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 36087219
Gene end: 36149371
  
Corresponding Affymetrix probe sets: Dr.510.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000154659
Ensembl peptide - ENSDARP00000076908
Ensembl peptide - ENSDARP00000129026
Ensembl peptide - ENSDARP00000129398
swissprot - A2BE60
swissprot - X1WFM2
swissprot - X1WGP0
ZFIN ID - ZDB-GENE-980526-532
Ensembl - ENSDARG00000070339
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9PWL5 / hoxa3a / hoxa4a / Q8AWZ2 / homeobox A3a / HOXA3* / P02831* / O43365* / homeobox A3* / Homeobox protein Hox-A3 *ENSDARG0000010386231
O42368 / hoxb3a / homeobox B3a / HOXB3* / P09026* / P14651* / homeobox B3* / Homeobox protein Hox-B3 *ENSDARG0000002926330
hoxa2b / homeobox A2b / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000002303127
hoxd3a / O42370 / homeobox D3a / HOXD3* / P31249* / P09027* / homeobox D3*ENSDARG0000005928026
hoxb2a / homeobox B2a / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000000017525
pdx1 / pancreatic and duodenal homeobox 1 / P52945* / P52946* / Pancreas/duodenum homeobox protein 1 *ENSDARG0000000277921
gsx1 / GS homeobox 1 / P31315* / Q9H4S2*ENSDARG0000003573521
gsx2 / GS homeobox 2 / P31316* / Q9BZM3*ENSDARG0000004332221
hoxb1a / homeobox B1aENSDARG0000000817419
hoxa1a / Q98SI1 / homeobox A1a / HOXA1* / P49639* / homeobox A1*ENSDARG0000010430718
hoxb1b / homeobox B1bENSDARG0000005403316
hoxc1a / Q98SH9 / homeobox C1a / HOXD1* / Q01822* / Q9GZZ0* / homeobox D1* / Homeobox protein Hox-D1 *ENSDARG0000007033716


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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