ENSDARG00000074465


Danio rerio

Features
Gene ID: ENSDARG00000074465
  
Biological name :vps13c
  
Synonyms : vacuolar protein sorting 13 homolog C (S. cerevisiae) / vps13c
  
Possible biological names infered from orthology : Q709C8 / Q8BX70 / vacuolar protein sorting 13C / vacuolar protein sorting 13 homolog C
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 29628398
Gene end: 29723761
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000142942
NCBI entrez gene - 798746     See in Manteia.
RefSeq - XM_021471939
RefSeq - XM_021471940
RefSeq - XM_021471935
RefSeq - XM_021477847
RefSeq - XM_021477848
RefSeq - XM_021477843
swissprot - A0A1D5NSX1
ZFIN ID - ZDB-GENE-070426-4
Ensembl - ENSDARG00000074465
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS13CENSGALG00000003705Gallus gallus
 Q709C8ENSG00000129003Homo sapiens
 Q8BX70ENSMUSG00000035284Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vps13a / vacuolar protein sorting 13 homolog A (S. cerevisiae) / Q80TY5* / Q96RL7* / VPS13B* / Q5H8C4* / Q7Z7G8* / vacuolar protein sorting 13B* / vacuolar protein sorting 13A* / vacuolar p...ENSDARG0000003922536
vps13d / vacuolar protein sorting 13 homolog D (S. cerevisiae) / Q5THJ4* / vacuolar protein sorting 13D* / vacuolar protein sorting 13 homolog D*ENSDARG0000001798616


Protein motifs (from Interpro)
Interpro ID Name
 IPR009543  Vacuolar protein sorting-associated protein 13, SHR-binding domain
 IPR026847  Vacuolar protein sorting-associated protein 13
 IPR026854  Vacuolar protein sorting-associated protein 13, N-terminal domain
 IPR031642  VPS13, repeated coiled region
 IPR031645  Vacuolar protein sorting-associated protein 13, C-terminal
 IPR031646  Vacuolar protein sorting-associated protein 13, second N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr