ENSDARG00000074726


Danio rerio
rnanrde2silencinghathalf-a-tprrepeattetratricopeptide-likehelicaldomainsuperfamilysirna-mediatedproteinnrde-processinginterferencechromatinsmallcatalyticstepspliceosome

Features
Gene ID: ENSDARG00000074726
  
Biological name :nrde2
  
Synonyms : nrde2 / NRDE-2, necessary for RNA interference, domain containing
  
Possible biological names infered from orthology : isoform b / Q80XC6 / Q9H7Z3
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 26718648
Gene end: 26750672
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000104069
Ensembl peptide - ENSDARP00000129284
NCBI entrez gene - 794348     See in Manteia.
swissprot - E7F365
ZFIN ID - ZDB-GENE-111117-3
Ensembl - ENSDARG00000074726
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NRDE2ENSGALG00000010677Gallus gallus
 NRDE2ENSG00000119720Homo sapiens
 Nrde2ENSMUSG00000021179Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013633  siRNA-mediated silencing protein NRDE-2


Gene Ontology (GO)
nitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationnitrogen compound metabnitrogen compound metabolic processcellular metabolic proccellular metabolic processprimary metabolic proceprimary metabolic processorganic substance metaborganic substance metabolic processbiosynthetic processbiosynthetic processcellular component orgacellular component organization
cellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellcellprotein-containing complexprotein-containing complexorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0016246 RNA interference IBA
 biological_processGO:0031048 chromatin silencing by small RNA IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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