ENSDARG00000076526


Danio rerio

Features
Gene ID: ENSDARG00000076526
  
Biological name :gar1
  
Synonyms : gar1 / GAR1 homolog, ribonucleoprotein
  
Possible biological names infered from orthology : GAR1 ribonucleoprotein / H/ACA ribonucleoprotein complex subunit 1 / Q9CY66 / Q9NY12
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 43603993
Gene end: 43616572
  
Corresponding Affymetrix probe sets: Dr.14883.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000101401
NCBI entrez gene - 393950     See in Manteia.
swissprot - F1RAE2
ZFIN ID - ZDB-GENE-040426-893
Ensembl - ENSDARG00000076526
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GAR1ENSGALG00000020164Gallus gallus
 GAR1ENSG00000109534Homo sapiens
 Gar1ENSMUSG00000028010Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007504  H/ACA ribonucleoprotein complex, subunit Gar1/Naf1
 IPR009000  Translation protein, beta-barrel domain superfamily
 IPR021154  H/ACA ribonucleoprotein complex, subunit Gar1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001522 pseudouridine synthesis IEA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0031429 box H/ACA snoRNP complex IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0009014 hematopoietic stem cell hematopoietic stem cell decreased amount , abnormal
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 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
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 ZFA:0009355 lymphoid progenitor cell lymphoid progenitor cell decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr