ENSDARG00000078902


Danio rerio

Features
Gene ID: ENSDARG00000078902
  
Biological name :rims1b
  
Synonyms : regulating synaptic membrane exocytosis 1b / rims1b
  
Possible biological names infered from orthology : Q86UR5 / regulating synaptic membrane exocytosis 1 / RIMS1
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 31374751
Gene end: 31505144
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000081549
swissprot - F1R0Z6
ZFIN ID - ZDB-GENE-101223-4
Ensembl - ENSDARG00000078902
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RIMS1ENSGALG00000015944Gallus gallus
 RIMS1ENSG00000079841Homo sapiens
 Rims1ENSMUSG00000041670Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rims1a / regulating synaptic membrane exocytosis 1a / RIMS1* / Q86UR5* / regulating synaptic membrane exocytosis 1*ENSDARG0000007468062
CR925804.2ENSDARG0000011370236
rims2b / regulating synaptic membrane exocytosis 2b / RIMS2* / Q9UQ26* / Q9EQZ7* / regulating synaptic membrane exocytosis 2* / Regulating synaptic membrane exocytosis protein 2 *ENSDARG0000010269020
rims2a / regulating synaptic membrane exocytosis 2a / RIMS2* / Q9UQ26* / Q9EQZ7* / regulating synaptic membrane exocytosis 2* / Regulating synaptic membrane exocytosis protein 2 *ENSDARG0000010160614
rims3 / regulating synaptic membrane exocytosis 3 / Q80U57* / Q9UJD0*ENSDARG0000006230512
rims4 / regulating synaptic membrane exocytosis 4 / Q9H426*ENSDARG0000005952311


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR001478  PDZ domain
 IPR010911  Rab-binding domain
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017455  Zinc finger, FYVE-related
 IPR030630  Regulating synaptic membrane exocytosis protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006887 exocytosis IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0048786 presynaptic active zone IEA
 molecular_functionGO:0017137 Rab GTPase binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Glutamate Neurotransmitter Release Cycle
Acetylcholine Neurotransmitter Release Cycle
GABA synthesis, release, reuptake and degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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