ENSDARG00000079011
Danio rerio | |
Features
| Gene ID: | ENSDARG00000079011 | | | | | Biological name : | col17a1b | | | | | Synonyms : | col17a1b / collagen, type XVII, alpha 1b | | | | | Possible biological names infered from orthology : | COL17A1 / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog / collagen type XVII alpha 1 chain / Q07563 / Q9UMD9 | | | | | Species: | Danio rerio | | | | | Chr. number: | 13 | | Strand: | 1 | | Band: | | | Gene start: | 24750078 | | Gene end: | 24779692 | | | | | Corresponding Affymetrix probe sets: | Dr.10041.1.A1_at (Zebrafish Array) Dr.10041.2.S1_at (Zebrafish Array) | | | | | Cross references: | Ensembl peptide - ENSDARP00000022516
Ensembl peptide - ENSDARP00000113743
Ensembl peptide - ENSDARP00000121297
swissprot - F1QTH6
swissprot - F1R619
swissprot - F1R7W0
ZFIN ID - ZDB-GENE-030131-7145
Ensembl - ENSDARG00000079011
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See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
| col17a1a / collagen, type XVII, alpha 1a / Q9UMD9* / Q07563* / COL17A1* / collagen type XVII alpha 1 chain* / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog* | ENSDARG00000069415 | 40 | | col28a2a / collagen, type XXVIII, alpha 2a | ENSDARG00000076321 | 20 | | col28a1a / collagen, type XXVIII, alpha 1a / Q2UY11* / Q2UY09* / COL28A1* / Collagen alpha-1(XXVIII) chain * / collagen type XXVIII alpha 1 chain* | ENSDARG00000077084 | 20 | | col28a1b / collagen, type XXVIII, alpha 1b / Q2UY09* / COL28A1* / collagen type XXVIII alpha 1 chain* | ENSDARG00000087087 | 20 | | col28a2b / collagen, type XXVIII, alpha 2b | ENSDARG00000100781 | 19 | | col6a2 / collagen, type VI, alpha 2 / P12110* / Q02788* / collagen type VI alpha 2 chain* / Mus musculus collagen, type VI, alpha 2 (Col6a2), transcript variant 2, mRNA.* | ENSDARG00000061436 | 14 | | col6a1 / collagen, type VI, alpha 1 / Q04857* / P12109* / Collagen alpha-1(VI) chain * / collagen type VI alpha 1 chain* | ENSDARG00000074908 | 13 | | colq / collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase / O35348* / Q9Y215* / Acetylcholinesterase collagenic tail peptide * / collagen like tail ... | ENSDARG00000019692 | 8 | | A5PMY6 / colec12 / collectin sub-family member 12 / Q8K4Q8* / Q5KU26* / Collectin-12 * / collectin subfamily member 12* | ENSDARG00000061140 | 8 | | wu:fc38h03 | ENSDARG00000074216 | 8 | | scara3 / scavenger receptor class A, member 3 / Q6AZY7* | ENSDARG00000008060 | 7 |
Protein motifs (from Interpro)
Gene Ontology (GO)
Pathways (from Reactome)
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000054 | pericardium | pericardium edematous , abnormal |
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| | ZFA:0000243 | neuromast | neuromast decreased amount , abnormal |
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| | ZFA:0001094 | whole organism | whole organism viability , abnormal |
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| | ZFA:0001117 | post-vent region | post-vent region curved , abnormal |
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| | ZFA:0009367 | neuromast hair cell | neuromast hair cell decreased amount , abnormal |
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Interacting proteins (from Reactome)
| ENSDARG00000038288 | cd151 / CD151 molecule / P48509* / O35566* / CD151 antigen * / CD151 molecule (Raph blood group)* | / complex / reaction | | ENSDARG00000068629 | cd151l / CD151 antigen, like / CD151* / P48509* / O35566* / CD151 antigen * / CD151 molecule (Raph blood group)* | / complex / reaction |
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