ENSDARG00000080021


Danio rerio

Features
Gene ID: ENSDARG00000080021
  
Biological name :zmat3
  
Synonyms : zinc finger, matrin-type 3 / zmat3
  
Possible biological names infered from orthology : Q9HA38
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 34522554
Gene end: 34537304
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000098269
Ensembl peptide - ENSDARP00000147361
NCBI entrez gene - 561535     See in Manteia.
swissprot - E7EZ09
ZFIN ID - ZDB-GENE-130530-881
Ensembl - ENSDARG00000080021
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZMAT3ENSGALG00000040948Gallus gallus
 ZMAT3ENSG00000172667Homo sapiens
 Zmat3ENSMUSG00000027663Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR013087  Zinc finger C2H2-type
 IPR022755  Zinc finger, double-stranded RNA binding


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator IBA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0002039 p53 binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr