ENSDARG00000086362


Danio rerio

Features
Gene ID: ENSDARG00000086362
  
Biological name :pou6f2
  
Synonyms : pou6f2 / POU class 6 homeobox 2
  
Possible biological names infered from orthology : P78424 / POU domain, class 6, transcription factor 2
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 10039165
Gene end: 10272212
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000105952
Ensembl peptide - ENSDARP00000120553
NCBI entrez gene - 100001518     See in Manteia.
swissprot - A0A0R4J6S2
swissprot - E7F3F7
ZFIN ID - ZDB-GENE-091118-71
Ensembl - ENSDARG00000086362
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POU6F2ENSGALG00000031713Gallus gallus
 P78424ENSG00000106536Homo sapiens
 Pou6f2ENSMUSG00000009734Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P31367 / pou6f1 / POU class 6 homeobox 1 / Q07916* / POU domain, class 6, transcription factor 1*ENSDARG0000001157033


Protein motifs (from Interpro)
Interpro ID Name
 IPR000327  POU-specific domain
 IPR001356  Homeobox domain
 IPR001623  DnaJ domain
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily
 IPR013847  POU domain
 IPR033056  POU domain, class 6, transcription factor 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0031099 regeneration IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000152 retina retina has fewer parts of type Muller cell , abnormal
retina regeneration process quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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