ENSDARG00000086425


Danio rerio

Features
Gene ID: ENSDARG00000086425
  
Biological name :prpf3
  
Synonyms : PRP3 pre-mRNA processing factor 3 homolog (yeast) / prpf3
  
Possible biological names infered from orthology : O43395 / pre-mRNA processing factor 3 / Q922U1 / U4/U6 small nuclear ribonucleoprotein Prp3
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 9433738
Gene end: 9453591
  
Corresponding Affymetrix probe sets: Dr.6366.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000107223
Ensembl peptide - ENSDARP00000115813
swissprot - E9QJ65
swissprot - Q6DRF8
ZFIN ID - ZDB-GENE-040823-3
Ensembl - ENSDARG00000086425
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRPF3ENSGALG00000028205Gallus gallus
 PRPF3ENSG00000117360Homo sapiens
 Prpf3ENSMUSG00000015748Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002483  PWI domain
 IPR010541  Domain of unknown function DUF1115
 IPR013881  Pre-mRNA-splicing factor 3
 IPR027104  U4/U6 small nuclear ribonucleoprotein Prp3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0060041 retina development in camera-type eye IMP
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000035 lens lens decreased size , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
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 ZFA:0000152 retina retina decreased size , abnormal
retina apoptotic , abnormal
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 ZFA:0000396 nervous system nervous system quality , abnormal
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 ZFA:0001094 whole organism whole organism color , abnormal
whole organism curled , abnormal
whole organism decreased size , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001439 anatomical system anatomical system quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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