ENSDARG00000087093


Danio rerio

Features
Gene ID: ENSDARG00000087093
  
Biological name :si:ch211-157c3.4
  
Synonyms : si:ch211-157c3.4
  
Possible biological names infered from orthology : AC022167.5 / Gm5767 / predicted 5767
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 27642386
Gene end: 27647845
  
Corresponding Affymetrix probe sets: Dr.26345.1.A1_at (Zebrafish Array)   Dr.9746.6.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000126137
Ensembl peptide - ENSDARP00000126144
Ensembl peptide - ENSDARP00000109985
Ensembl peptide - ENSDARP00000125685
NCBI entrez gene - 561592     See in Manteia.
RefSeq - NM_001164368
RefSeq - XM_005163948
RefSeq Peptide - NP_001157840
swissprot - E7FAA1
swissprot - I3IS21
ZFIN ID - ZDB-GENE-030131-8454
Ensembl - ENSDARG00000087093
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000034222Gallus gallus
 AC022167.5ENSG00000283516Homo sapiens
 Gm5767ENSMUSG00000107252Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkeyp-75b4.8ENSDARG0000007754225
Q6DGM1 / ubald1a / UBA-like domain containing 1a / Gm5767* / AC022167.5* / predicted 5767 *ENSDARG0000000236223
si:ch211-202h22.7ENSDARG0000007391223
si:ch211-202h22.8ENSDARG0000007813823
litaf / Q6GMG8 / lipopolysaccharide-induced TNF factor / Q99732* / Q9JLJ0* / Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog *ENSDARG0000010348323
LO018550.2ENSDARG0000011158323
cdip1 / cell death-inducing p53 target 1 / Q9DB75* / Q9H305* / Mus musculus cell death inducing Trp53 target 1 (Cdip1), transcript variant 5, mRNA.*ENSDARG0000007611822
si:ch211-202h22.9ENSDARG0000007998022


Protein motifs (from Interpro)
Interpro ID Name
 IPR006629  LPS-induced tumour necrosis factor alpha factor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr