ENSDARG00000087994


Danio rerio

Features
Gene ID: ENSDARG00000087994
  
Biological name :si:ch211-114c17.1
  
Synonyms : si:ch211-114c17.1
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 45488922
Gene end: 45512807
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000142116
Ensembl peptide - ENSDARP00000112454
NCBI entrez gene - 100334796     See in Manteia.
RefSeq - XM_002664461
swissprot - F1REM4
swissprot - A0A140LFU1
ZFIN ID - ZDB-GENE-140106-201
Ensembl - ENSDARG00000087994
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prpf39 / Q1JPZ7 / PRP39 pre-mRNA processing factor 39 homolog (yeast) / Q86UA1* / pre-mRNA processing factor 39*ENSDARG0000010020942


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000395 mRNA 5"-splice site recognition IBA
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0000243 commitment complex IBA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 molecular_functionGO:0030627 pre-mRNA 5"-splice site binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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