ENSDARG00000088087


Danio rerio

Features
Gene ID: ENSDARG00000088087
  
Biological name :kdm6ba
  
Synonyms : kdm6ba / lysine (K)-specific demethylase 6B, a
  
Possible biological names infered from orthology : KDM6B / lysine demethylase 6B / Lysine-specific demethylase 6B / O15054 / Q5NCY0
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 21632100
Gene end: 21778474
  
Corresponding Affymetrix probe sets: Dr.9476.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000110911
Ensembl peptide - ENSDARP00000142796
NCBI entrez gene - 556678     See in Manteia.
RefSeq - XM_005172239
RefSeq - XM_009303125
RefSeq - XM_021477779
RefSeq - XM_021477780
RefSeq - XM_005172240
swissprot - E7F6X8
swissprot - A0A1D5NSI1
ZFIN ID - ZDB-GENE-091005-1
Ensembl - ENSDARG00000088087
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KDM6BENSG00000132510Homo sapiens
 Kdm6bENSMUSG00000018476Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
kdm6bb / lysine (K)-specific demethylase 6B, bENSDARG0000005692929
kdm6a / lysine (K)-specific demethylase 6A / UTY* / O70546* / O14607* / O15550* / lysine demethylase 6A* / Lysine-specific demethylase 6A * / ubiquitously transcribed tetratricopeptide repe...ENSDARG0000006175921
kdm6al / lysine (K)-specific demethylase 6A, likeENSDARG0000005979419


Protein motifs (from Interpro)
Interpro ID Name
 IPR003347  JmjC domain
 IPR029518  Lysine-specific demethylase 6B


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0071557 histone H3-K27 demethylation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0071558 histone demethylase activity (H3-K27 specific) IEA


Pathways (from Reactome)
Pathway description
Oxidative Stress Induced Senescence


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000068436 Q6PI20 / h3f3b.1 / H3 histone, family 3B.1 / H3F3B* / H3F3C* / P84243* / Q6NXT2* / H3 histone family member 3C* / H3 histone family member 3B*  / reaction
 ENSDARG00000105345 zgc:173552  / reaction
 ENSDARG00000105359 Q4QRF4 / FP325123.1 / Histone H3.2   / reaction






 

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