ENSDARG00000088383


Danio rerio

Features
Gene ID: ENSDARG00000088383
  
Biological name :cox5aa
  
Synonyms : cox5aa / cytochrome c oxidase subunit Vaa
  
Possible biological names infered from orthology : COX5A / cytochrome c oxidase subunit 5A / Cytochrome c oxidase subunit 5A, mitochondrial / P12787 / P20674
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 29075145
Gene end: 29080125
  
Corresponding Affymetrix probe sets: Dr.7464.1.S1_at (Zebrafish Array)   NM_001024403_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000123538
Ensembl peptide - ENSDARP00000149294
NCBI entrez gene - 554101     See in Manteia.
RefSeq - NM_001024403
RefSeq Peptide - NP_001019574
swissprot - Q4VBU7
ZFIN ID - ZDB-GENE-050522-133
Ensembl - ENSDARG00000088383
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COX5AENSGALG00000014121Gallus gallus
 COX5AENSG00000178741Homo sapiens
 Cox5aENSMUSG00000000088Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cox5ab / cytochrome c oxidase subunit Vab / COX5A* / P20674* / cytochrome c oxidase subunit 5A*ENSDARG0000009966376


Protein motifs (from Interpro)
Interpro ID Name
 IPR003204  Cytochrome c oxidase, subunit Va/VI


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006123 mitochondrial electron transport, cytochrome c to oxygen IBA
 biological_processGO:0021522 spinal cord motor neuron differentiation IMP
 biological_processGO:0048568 embryonic organ development IMP
 biological_processGO:1902600 proton transmembrane transport IEA
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 cellular_componentGO:0005751 mitochondrial respiratory chain complex IV IBA
 molecular_functionGO:0004129 cytochrome-c oxidase activity IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000084 yolk yolk edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut decreased size , abnormal
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 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism lethal (sensu genetics) , abnormal
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 ZFA:0001114 head head shape , abnormal
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 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton decreased size , abnormal
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 ZFA:0009247 secondary motor neuron secondary motor neuron spatial pattern , abnormal
secondary motor neuron decreased amount , abnormal
secondary motor neuron axon decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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