ENSDARG00000090851


Danio rerio

Features
Gene ID: ENSDARG00000090851
  
Biological name :ciita
  
Synonyms : ciita / class II, major histocompatibility complex, transactivator
  
Possible biological names infered from orthology : MHC class II transactivator / P33076 / P79621
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 26908978
Gene end: 26921475
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000105957
NCBI entrez gene - 100003537     See in Manteia.
RefSeq - XM_001343036
swissprot - E7F3F4
ZFIN ID - ZDB-GENE-071116-6
Ensembl - ENSDARG00000090851
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CIITAENSGALG00000007171Gallus gallus
 CIITAENSG00000179583Homo sapiens
 CiitaENSMUSG00000022504Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nlrc5 / NLR family, CARD domain containing 5 / C3VPR6* / Q86WI3* / Protein NLRC5 *ENSDARG0000002463118
si:dkey-13n15.11ENSDARG0000007800215
si:ch211-149a19.3ENSDARG0000007945615
si:dkey-230i18.2ENSDARG0000009353215
si:ch73-168d20.1ENSDARG0000003990014
si:ch211-250k18.5ENSDARG0000006874914
si:ch211-156p11.1ENSDARG0000007160414
si:ch211-214b16.4ENSDARG0000007434514
si:ch211-233m11.1ENSDARG0000007465314
nlrc8 / NLR family CARD domain containing 8ENSDARG0000007681914
si:ch211-208f21.3ENSDARG0000007722014
nlrp16 / NACHT, LRR and PYD domains-containing protein 16ENSDARG0000007767314
nlrc9 / NLR family CARD domain containing 9ENSDARG0000007810114
si:dkey-126g1.7ENSDARG0000008670314
si:ch211-278p9.1ENSDARG0000008753214
si:dkey-156c23.1 / si:ch211-226o13.1ENSDARG0000008771414
si:ch211-22k7.9ENSDARG0000008778814
si:dkey-16p6.1ENSDARG0000008824514
si:dkey-211i20.2 / si:dkey-254e13.6ENSDARG0000008830114
si:dkey-16p6.1 / si:ch211-76m11.5 / si:dkey-159n16.2ENSDARG0000008883614


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR007111  NACHT nucleoside triphosphatase
 IPR008095  MHC class II transactivator
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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