ENSDARG00000093606


Danio rerio

Features
Gene ID: ENSDARG00000093606
  
Biological name :si:dkey-159f12.2
  
Synonyms : si:dkey-159f12.2
  
Possible biological names infered from orthology : P62280 / P62281 / ribosomal protein S11 / RPS11
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 26702003
Gene end: 26703235
  
Corresponding Affymetrix probe sets: Dr.6615.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000123530
Ensembl peptide - ENSDARP00000154563
NCBI entrez gene - 101886382     See in Manteia.
RefSeq - XM_021478451
swissprot - A9C3W5
ZFIN ID - ZDB-GENE-081105-168
Ensembl - ENSDARG00000093606
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS11ENSGALG00000017299Gallus gallus
 RPS11ENSG00000142534Homo sapiens
 Rps11ENSMUSG00000003429Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rps11 / ribosomal protein S11 / P62280* / P62281*ENSDARG0000005305878


Protein motifs (from Interpro)
Interpro ID Name
 IPR000266  Ribosomal protein S17/S11
 IPR012340  Nucleic acid-binding, OB-fold
 IPR032440  40S ribosomal protein S11, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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