ENSDARG00000096306


Danio rerio

Features
Gene ID: ENSDARG00000096306
  
Biological name :si:ch1073-342h5.2
  
Synonyms : si:ch1073-342h5.2
  
Possible biological names infered from orthology : leucine rich repeat containing 41 / Leucine-rich repeat-containing protein 41 / LRRC41 / Q15345 / Q8K1C9
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 3492972
Gene end: 3507536
  
Corresponding Affymetrix probe sets: Dr.18153.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000125718
Ensembl peptide - ENSDARP00000145915
NCBI entrez gene - 100333617     See in Manteia.
swissprot - I3IS54
ZFIN ID - ZDB-GENE-120215-249
Ensembl - ENSDARG00000096306
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRRC41ENSGALG00000010359Gallus gallus
 LRRC41ENSG00000132128Homo sapiens
 Lrrc41ENSMUSG00000028703Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR026137  Leucine-rich repeat-containing 41
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0042803 protein homodimerization activity IBA


Pathways (from Reactome)
Pathway description
Neddylation
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000037980 elob / elongin B / Elobl* / P62869* / Q15370*  / complex
 ENSDARG00000038030 rbx1 / ring-box 1, E3 ubiquitin protein ligase / P62878* / P62877* / ring-box 1* / E3 ubiquitin-protein ligase RBX1 E3 ubiquitin-protein ligase RBX1, N-terminally processed*  / complex
 ENSDARG00000045359 elocb / elongin C paralog b / ELOC* / P83940* / Q15369* / elongin C*  / complex
 ENSDARG00000069742 cul5a / cullin 5a / CUL5* / Q93034* / cullin 5*  / complex
 ENSDARG00000004260 cul5b / cullin 5b / CUL5* / Q93034* / cullin 5*  / complex






 

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