ENSDARG00000098312


Danio rerio

Features
Gene ID: ENSDARG00000098312
  
Biological name :scarb2a
  
Synonyms : scarb2a / scavenger receptor class B, member 2a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 52844681
Gene end: 52862805
  
Corresponding Affymetrix probe sets: Dr.18321.1.S1_at (Zebrafish Array)   Dr.1854.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000139751
Ensembl peptide - ENSDARP00000154764
NCBI entrez gene - 192340     See in Manteia.
swissprot - Q8JGR8
ZFIN ID - ZDB-GENE-020419-29
Ensembl - ENSDARG00000098312
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cd36 / CD36 molecule (thrombospondin receptor) / P16671* / Q08857* / CD36 molecule* / Platelet glycoprotein 4 *ENSDARG0000003263928
scarb1 / scavenger receptor class B, member 1 / Q61009* / Q8WTV0*ENSDARG0000010155727
scarb2c / scavenger receptor class B, member 2c / Q14108* / SCARB2* / scavenger receptor class B member 2*ENSDARG0000008984425


Protein motifs (from Interpro)
Interpro ID Name
 IPR002159  CD36 family
 IPR005429  Lysosome membrane protein II


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030903 notochord development IMP
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain absent , abnormal
brain quality , abnormal
Show

 ZFA:0000029 hindbrain hindbrain irregular spatial pattern , abnormal
hindbrain surface feature shape , abnormal
hindbrain quality , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
Show

 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
Show

 ZFA:0000135 notochord notochord morphology , abnormal
notochord posterior region absent , abnormal
notochord vacuole position , abnormal
notochord vacuole decreased size , abnormal
notochord basement membrane malformed , abnormal
notochord basement membrane increased thickness , abnormal
notochord basement membrane vacuolated , abnormal
notochord vacuole malformed , abnormal
notochord quality , abnormal
Show

 ZFA:0001094 whole organism whole organism bent , abnormal
Show

 ZFA:0001114 head head shape , abnormal
head decreased size , abnormal
head cuboid , abnormal
Show

 ZFA:0001115 trunk trunk curved dorsal , abnormal
trunk decreased pigmentation , abnormal
trunk curved , abnormal
Show

 ZFA:0001117 post-vent region post-vent region decreased pigmentation , abnormal
Show

 ZFA:0009090 pigment cell pigment cell quality , abnormal
Show

 ZFA:0009091 melanocyte melanocyte quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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