ENSDARG00000099609


Danio rerio

Features
Gene ID: ENSDARG00000099609
  
Biological name :tpbga
  
Synonyms : tpbga / trophoblast glycoprotein a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 14059349
Gene end: 14061987
  
Corresponding Affymetrix probe sets: Dr.25206.1.S1_at (Zebrafish Array)   NM_194392_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000138548
NCBI entrez gene - 373095     See in Manteia.
RefSeq - NM_194392
RefSeq Peptide - NP_919373
swissprot - A0A0R4ITS3
ZFIN ID - ZDB-GENE-030827-4
Ensembl - ENSDARG00000099609
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tpbgl / trophoblast glycoprotein-likeENSDARG0000011433849
tpbgb / trophoblast glycoprotein b / TPBG* / Q9Z0L0* / Q13641* / trophoblast glycoprotein*ENSDARG0000003718641
waif2 / Wnt-activated inhibitory factor 2 / TPBGL* / Q8C013* / P0DKB5* / trophoblast glycoprotein like*ENSDARG0000005457531


Protein motifs (from Interpro)
Interpro ID Name
 IPR000372  Leucine-rich repeat N-terminal domain
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway IMP
 biological_processGO:2000052 positive regulation of non-canonical Wnt signaling pathway IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000037 anatomical structure anatomical structure increased amount , abnormal
Show

 ZFA:0000571 presumptive telencephalon presumptive telencephalon decreased distribution , abnormal
Show

 ZFA:0001094 whole organism whole organism dorsal region decreased distribution , abnormal
whole organism length , ameliorated
Show

 ZFA:0007016 anterior neural plate anterior neural plate decreased distribution , abnormal
Show

 ZFA:0007017 posterior neural plate posterior neural plate increased distribution , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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