ENSDARG00000099966


Danio rerio

Features
Gene ID: ENSDARG00000099966
  
Biological name :polr2a
  
Synonyms : polr2a / polymerase (RNA) II (DNA directed) polypeptide A
  
Possible biological names infered from orthology : DNA-directed RNA polymerase II subunit RPB1 / P08775
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 22560067
Gene end: 22573297
  
Corresponding Affymetrix probe sets: Dr.15833.1.A1_at (Zebrafish Array)   Dr.15833.2.S1_at (Zebrafish Array)   Dr.15833.3.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000135038
NCBI entrez gene - 553347     See in Manteia.
RefSeq - XM_005156225
swissprot - A0A0R4IMS9
ZFIN ID - ZDB-GENE-041008-78
Ensembl - ENSDARG00000099966
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 P08775ENSMUSG00000005198Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
polr3a / polymerase (RNA) III (DNA directed) polypeptide A / O14802* / RNA polymerase III subunit A*ENSDARG0000010256924


Protein motifs (from Interpro)
Interpro ID Name
 IPR000684  RNA polymerase II, heptapeptide repeat, eukaryotic
 IPR000722  RNA polymerase, alpha subunit
 IPR006592  RNA polymerase, N-terminal
 IPR007066  RNA polymerase Rpb1, domain 3
 IPR007073  RNA polymerase Rpb1, domain 7
 IPR007075  RNA polymerase Rpb1, domain 6
 IPR007080  RNA polymerase Rpb1, domain 1
 IPR007081  RNA polymerase Rpb1, domain 5
 IPR007083  RNA polymerase Rpb1, domain 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 cellular_componentGO:0005665 DNA-directed RNA polymerase II, core complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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