ENSDARG00000100558


Danio rerio

Features
Gene ID: ENSDARG00000100558
  
Biological name :slbp
  
Synonyms : slbp / stem-loop binding protein
  
Possible biological names infered from orthology : P97440 / Q14493
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 14841685
Gene end: 14846166
  
Corresponding Affymetrix probe sets: Dr.24852.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000140437
Ensembl peptide - ENSDARP00000141903
NCBI entrez gene - 407727     See in Manteia.
RefSeq - NM_001256193
RefSeq Peptide - NP_001243122
swissprot - A0A0R4IZV7
swissprot - A0A0R4IVR7
ZFIN ID - ZDB-GENE-030131-9686
Ensembl - ENSDARG00000100558
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLBPENSGALG00000015712Gallus gallus
 SLBPENSG00000163950Homo sapiens
 SlbpENSMUSG00000004642Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
slbp2 / stem-loop binding protein 2ENSDARG0000006942823


Protein motifs (from Interpro)
Interpro ID Name
 IPR026502  Histone RNA stem-loop-binding protein SLBP1/SLBP2
 IPR029344  Histone RNA hairpin-binding protein, RNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003407 neural retina development IMP
 biological_processGO:0031290 retinal ganglion cell axon guidance IMP
 biological_processGO:0046530 photoreceptor cell differentiation IMP
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0001115 trunk trunk curved ventral , abnormal
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 ZFA:0001202 optic cup optic cup axon misrouted , abnormal
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 ZFA:0001289 ciliary marginal zone ciliary marginal zone cell proliferation disrupted , abnormal
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 ZFA:0001464 retinal outer nuclear layer retinal outer nuclear layer absent , abnormal
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 ZFA:0005491 optic furrow optic furrow closure incomplete , abnormal
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 ZFA:0009310 retinal ganglion cell retinal ganglion cell axon misrouted , abnormal
retinal ganglion cell decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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