ENSDARG00000102265


Danio rerio

Features
Gene ID: ENSDARG00000102265
  
Biological name :smarcal1
  
Synonyms : smarcal1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
  
Possible biological names infered from orthology : Q8BJL0 / Q9NZC9 / SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 52479142
Gene end: 52490579
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000140731
swissprot - A0A0R4IYD9
ZFIN ID - ZDB-GENE-041210-303
Ensembl - ENSDARG00000102265
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMARCAL1ENSGALG00000011475Gallus gallus
 Q9NZC9ENSG00000138375Homo sapiens
 Q8BJL0ENSMUSG00000039354Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
btaf1 / BTAF1 RNA polymerase II, B-TFIID transcription factor-associated / O14981* / B-TFIID TATA-box binding protein associated factor 1*ENSDARG0000006008918
zranb3 / zinc finger, RAN-binding domain containing 3 / Q5FWF4* / Q6NZP1* / zinc finger RANBP2-type containing 3*ENSDARG0000009153810


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR010003  HARP domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030101  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000733 DNA strand renaturation IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0031297 replication fork processing IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0036310 annealing helicase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0001094 whole organism whole organism pigment granule decreased amount , abnormal
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 ZFA:0001114 head head decreased length , abnormal
head decreased size , abnormal
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 ZFA:0001115 trunk trunk decreased length , abnormal
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 ZFA:0001399 palatoquadrate cartilage palatoquadrate cartilage decreased size , abnormal
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 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage decreased size , abnormal
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 ZFA:0001422 hyosymplectic cartilage hyosymplectic cartilage decreased size , abnormal
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 ZFA:0001518 ceratobranchial 3 cartilage ceratobranchial 3 cartilage aplastic , abnormal
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 ZFA:0001519 ceratobranchial 4 cartilage ceratobranchial 4 cartilage aplastic , abnormal
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 ZFA:0001521 ceratobranchial 5 cartilage ceratobranchial 5 cartilage aplastic , abnormal
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 ZFA:0005034 parachordal vessel parachordal vessel aplastic , abnormal
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 ZFA:0005035 subintestinal vein subintestinal vein aplastic , abnormal
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 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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