ENSDARG00000102643


Danio rerio
layercerebellichmp1atransportgranularcorpusmolecularvalvulasnffamilychargedmultivesicularbodyproteinvacuolarmitoticchromosomecondensationvesicle-mediatedescrtiiicomplexnuclearmatrixcerebellumforebrain

Features
Gene ID: ENSDARG00000102643
  
Biological name :chmp1a
  
Synonyms : charged multivesicular body protein 1A / chmp1a
  
Possible biological names infered from orthology : Q921W0 / Q9HD42
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 37435335
Gene end: 37441657
  
Corresponding Affymetrix probe sets: Dr.10291.1.A1_at (Zebrafish Array)   Dr.10291.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130498
Ensembl peptide - ENSDARP00000141533
swissprot - A0A0R4IC92
swissprot - A0A0R4IZC4
ZFIN ID - ZDB-GENE-040426-1474
Ensembl - ENSDARG00000102643
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHMP1AENSGALG00000006161Gallus gallus
 CHMP1AENSG00000131165Homo sapiens
 Chmp1aENSMUSG00000000743Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
chmp1b / Q7ZVB1 / chromatin modifying protein 1B / Q7LBR1* / charged multivesicular body protein 1B*ENSDARG0000009962452


Protein motifs (from Interpro)
Interpro ID Name
 IPR005024  Snf7 family
 IPR029888  Charged multivesicular body protein 1a


Gene Ontology (GO)
establishment of localizationcellular component organizationcell cyclechromosome segregationestablishment of localizationcellular component organizationcell cyclechromosome segregationestablishment of localizationcellular component organizationcell cyclechromosome segregationestablishment of localizationcellular component organizationcell cyclechromosome segregationestablishment of localizationcellular component organizationcell cyclechromosome segregationestablishment of localizationcellular component organizationcell cyclechromosome segregationestablishment of localizationcellular component organizationcell cyclechromosome segregationestablishment of localizationcellular component organizationcell cyclechromosome segregationestablishment of localizationcellular component organizationcell cyclechromosome segregationestablishment of localizationcellular component organizationcell cyclechromosome segregationestablishment of localizationestablishment of localizationcellular component organizationcellular component organizationcell cyclecell cyclechromosome segregationchromosome segregation
cellmembraneprotein-containing complexorganellemembrane-enclosed lumencellmembraneprotein-containing complexorganellemembrane-enclosed lumencellmembraneprotein-containing complexorganellemembrane-enclosed lumencellmembraneprotein-containing complexorganellemembrane-enclosed lumencellmembraneprotein-containing complexorganellemembrane-enclosed lumencellmembraneprotein-containing complexorganellemembrane-enclosed lumencellmembraneprotein-containing complexorganellemembrane-enclosed lumencellmembraneprotein-containing complexorganellemembrane-enclosed lumencellmembraneprotein-containing complexorganellemembrane-enclosed lumencellmembraneprotein-containing complexorganellemembrane-enclosed lumencellcellmembranemembraneprotein-containing complexprotein-containing complexorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumen
TypeGO IDTermEv.Code
 biological_processGO:0007034 vacuolar transport IEA
 biological_processGO:0007076 mitotic chromosome condensation IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0000815 ESCRT III complex IEA
 cellular_componentGO:0016363 nuclear matrix IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000100 cerebellum cerebellum decreased volume , abnormal
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 ZFA:0000109 forebrain forebrain decreased volume , abnormal
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 ZFA:0000358 granular layer corpus cerebelli granular layer corpus cerebelli decreased size , abnormal
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 ZFA:0000394 molecular layer corpus cerebelli molecular layer corpus cerebelli decreased size , abnormal
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 ZFA:0000766 granular layer valvula cerebelli granular layer valvula cerebelli decreased size , abnormal
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 ZFA:0000913 molecular layer valvula cerebelli molecular layer valvula cerebelli decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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