ENSDARG00000103337


Danio rerio

Features
Gene ID: ENSDARG00000103337
  
Biological name :rrp1
  
Synonyms : ribosomal RNA processing 1 / rrp1
  
Possible biological names infered from orthology : P56182 / P56183 / Q14684 / Q91YK2 / ribosomal RNA processing 1B / Ribosomal RNA processing A / Ribosomal RNA processing B / RRP1B
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 145093
Gene end: 153070
  
Corresponding Affymetrix probe sets: Dr.16314.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000139145
swissprot - A0A0G2L325
ZFIN ID - ZDB-GENE-030131-9837
Ensembl - ENSDARG00000103337
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RRP1BENSGALG00000035696Gallus gallus
 RRP1ENSG00000160214Homo sapiens
 RRP1BENSG00000160208Homo sapiens
 Rrp1ENSMUSG00000061032Mus musculus
 Rrp1bENSMUSG00000058392Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR010301  Nucleolar, Nop52


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006364 rRNA processing IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0030687 preribosome, large subunit precursor IBA
 cellular_componentGO:0030688 preribosome, small subunit precursor IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain quality , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000029 hindbrain hindbrain quality , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary quality , abnormal
midbrain hindbrain boundary condensed , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk quality , abnormal
yolk circular , abnormal
yolk grey , abnormal
Show

 ZFA:0000106 extension extension decreased thickness , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
Show

 ZFA:0000114 heart heart quality , abnormal
Show

 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
Show

 ZFA:0000396 nervous system nervous system quality , abnormal
Show

 ZFA:0001094 whole organism whole organism shape , abnormal
whole organism viability , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased thickness , abnormal
trunk atrophied , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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