ENSDARG00000103551


Danio rerio

Features
Gene ID: ENSDARG00000103551
  
Biological name :rnf213b
  
Synonyms : A0A0R4I9Y1 / ring finger protein 213b / rnf213b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 35914103
Gene end: 35936329
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000130736
NCBI entrez gene - 563001     See in Manteia.
RefSeq - NM_001353867
RefSeq Peptide - NP_001340796
swissprot - A0A0R4I9Y1
ZFIN ID - ZDB-GENE-110822-1
Ensembl - ENSDARG00000103551
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnf213a / A0A0R4IBK5 / ring finger protein 213a / Q63HN8* / RNF213* / ring finger protein 213*ENSDARG0000009946533
CABZ01058333.1 / E9Q555* / Q63HN8* / RNF213* / ring finger protein 213*ENSDARG000001134580


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR003593  AAA+ ATPase domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR031248  RNF213 protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr