ENSDARG00000105003


Danio rerio

Features
Gene ID: ENSDARG00000105003
  
Biological name :scn1bb
  
Synonyms : scn1bb / sodium channel, voltage-gated, type I, beta b
  
Possible biological names infered from orthology : P97952 / Q07699 / SCN1B / Sodium channel subunit beta-1 / sodium voltage-gated channel beta subunit 1
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 206835
Gene end: 212478
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000135746
swissprot - A0A0H2UKN7
ZFIN ID - ZDB-GENE-090408-1
Ensembl - ENSDARG00000105003
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCN1BENSG00000105711Homo sapiens
 Scn1bENSMUSG00000019194Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
scn1ba / sodium channel, voltage-gated, type I, beta a / SCN1B* / Q07699* / P97952* / Sodium channel subunit beta-1 * / sodium voltage-gated channel beta subunit 1*ENSDARG0000006022269
si:ch211-225p5.8 / SCN1B* / Q07699* / P97952* / Sodium channel subunit beta-1 * / sodium voltage-gated channel beta subunit 1*ENSDARG0000007017047
scn3b / sodium channel, voltage-gated, type III, beta / Q8BHK2* / Q9NY72* / sodium voltage-gated channel beta subunit 3*ENSDARG0000006235938


Protein motifs (from Interpro)
Interpro ID Name
 IPR007110  Immunoglobulin-like domain
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold
 IPR027098  Sodium channel subunit beta-1/beta-3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006814 sodium ion transport IMP
 biological_processGO:0007155 cell adhesion IMP
 biological_processGO:0035725 sodium ion transmembrane transport IEA
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0001518 voltage-gated sodium channel complex IEA
 cellular_componentGO:0043025 neuronal cell body IDA
 cellular_componentGO:0043209 myelin sheath IDA
 molecular_functionGO:0005248 voltage-gated sodium channel activity IMP
 molecular_functionGO:0017080 sodium channel regulator activity IEA


Pathways (from Reactome)
Pathway description
Phase 0 - rapid depolarisation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000051 otic vesicle otic vesicle hair cell increased amount , abnormal
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 ZFA:0000249 cranial nerve I cranial nerve I fasciculation , abnormal
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 ZFA:0009052 motor neuron motor neuron axon branchiness , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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