ENSDARG00000113972


Danio rerio

Features
Gene ID: ENSDARG00000113972
  
Biological name :RF00004
  
Synonyms : RF00004
  
Possible biological names infered from orthology : Gm22423 / Gm22973 / Gm23260 / Gm23444 / Gm23472 / Gm23849 / Gm23971 / Gm24497 / Gm24764 / Gm24950 / Gm25202 / Gm25259 / Gm25360 / Gm25813 / Gm25939 / Gm26020 / Gm26105 / Gm26316 / predicted gene, 22423 / predicted gene, 22973 / predicted gene, 23260 / predicted gene, 23444 / predicted gene, 23472 / predicted gene, 23849 / predicted gene, 23971 / predicted gene, 24497 / predicted gene, 24764 / predicted gene, 24950 / predicted gene, 25202 / predicted gene, 25259 / predicted gene, 25360 / predicted gene, 25813 / predicted gene, 25939 / predicted gene, 26020 / predicted gene, 26105 / predicted gene, 26316 / RNA, U2 small nuclear 1 / RNA, U2 small nuclear 12, pseudogene / RNA, U2 small nuclear 25, pseudogene / RNA, U2 small nuclear 26, pseudogene / RNA, U2 small nuclear 2, pseudogene / RNA, U2 small nuclear 3, pseudogene / RNA, U2 small nuclear 48, pseudogene / RNA, U2 small nuclear 49, pseudogene / RNA, U2 small nuclear 56, pseudogene / RNA, U2 small nuclear 57, pseudogene / RNA, U2 small nuclear 5, pseudogene / RNA, U2 small nuclear 62, pseudogene / RNA, U2 small nuclear 63, pseudogene / RNA, U2 small nuclear 68, pseudogene / RNA, U2 small nuclear 6, pseudogene / RNA, U2 small nuclear 70, pseudogene / RNA, U2 small nuclear 71, pseudogene / RNA, U2 small nuclear 7, pseudogene / RNU2-1 / Rnu2-10 / RNU2-12P / RNU2-25P / RNU2-26P / RNU2-2P / RNU2-3P / RNU2-48P / RNU2-49P / RNU2-56P / RNU2-57P / RNU2-5P / RNU2-62P / RNU2-63P / RNU2-68P / RNU2-6P / RNU2-70P / RNU2-71P / RNU2-7P / U2 small nuclear RNA 10
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 14665168
Gene end: 14665353
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl - ENSDARG00000113972
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RF00004ENSG00000277903Homo sapiens
 RF00004ENSG00000278048Homo sapiens
 RF00004ENSG00000274452Homo sapiens
 RF00004ENSG00000276596Homo sapiens
 RF00004ENSG00000275219Homo sapiens
 RF00004ENSG00000274432Homo sapiens
 RF00004ENSG00000278774Homo sapiens
 RF00004ENSG00000273709Homo sapiens
 RF00004ENSG00000275616Homo sapiens
 RF00004ENSG00000274062Homo sapiens
 RF00004ENSG00000278591Homo sapiens
 RF00004ENSG00000274862Homo sapiens
 RNU2-1ENSG00000274585Homo sapiens
 RNU2-12PENSG00000253025Homo sapiens
 RNU2-25PENSG00000222973Homo sapiens
 RNU2-26PENSG00000222440Homo sapiens
 RNU2-2PENSG00000222328Homo sapiens
 RNU2-3PENSG00000222076Homo sapiens
 RNU2-48PENSG00000222626Homo sapiens
 RNU2-49PENSG00000222598Homo sapiens
 RNU2-56PENSG00000252635Homo sapiens
 RNU2-57PENSG00000252468Homo sapiens
 RNU2-5PENSG00000222465Homo sapiens
 RNU2-62PENSG00000222800Homo sapiens
 RNU2-63PENSG00000222724Homo sapiens
 RNU2-68PENSG00000222810Homo sapiens
 RNU2-6PENSG00000223336Homo sapiens
 RNU2-70PENSG00000222650Homo sapiens
 RNU2-71PENSG00000223327Homo sapiens
 RNU2-7PENSG00000222726Homo sapiens
 Gm22423ENSMUSG00000064795Mus musculus
 Gm22973ENSMUSG00000065232Mus musculus
 Gm23260ENSMUSG00000088942Mus musculus
 Gm23444ENSMUSG00000064856Mus musculus
 Gm23472ENSMUSG00000094050Mus musculus
 Gm23849ENSMUSG00000065767Mus musculus
 Gm23971ENSMUSG00000065251Mus musculus
 Gm24497ENSMUSG00000093956Mus musculus
 Gm24764ENSMUSG00000065620Mus musculus
 Gm24950ENSMUSG00000064702Mus musculus
 Gm25202ENSMUSG00000064772Mus musculus
 Gm25259ENSMUSG00000064982Mus musculus
 Gm25360ENSMUSG00000094655Mus musculus
 Gm25813ENSMUSG00000064682Mus musculus
 Gm25939ENSMUSG00000093843Mus musculus
 Gm26020ENSMUSG00000084678Mus musculus
 Gm26105ENSMUSG00000087878Mus musculus
 Gm26316ENSMUSG00000065820Mus musculus
 Rnu2-10ENSMUSG00000065944Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RF00004 / RNU2-17P* / RNA, U2 small nuclear 17, pseudogene*ENSDARG0000008232140
RF00004 / RNU2-44P* / RNU2-69P* / RNA, U2 small nuclear 44, pseudogene* / RNA, U2 small nuclear 69, pseudogene*ENSDARG0000011170940
RF00004 / RNU2-44P* / RNU2-69P* / RNA, U2 small nuclear 44, pseudogene* / RNA, U2 small nuclear 69, pseudogene*ENSDARG0000011518640
RF00004 / RNU2-17P* / RNA, U2 small nuclear 17, pseudogene*ENSDARG0000011039939
RF00004 / RNU2-17P* / RNA, U2 small nuclear 17, pseudogene*ENSDARG0000011520439
RF00004 / RNU2-17P* / RNA, U2 small nuclear 17, pseudogene*ENSDARG0000011703539
RF00004 / RNU2-55P* / RNA, U2 small nuclear 55, pseudogene*ENSDARG0000008077438
RF00004 / RNU2-44P* / RNU2-69P* / RNA, U2 small nuclear 44, pseudogene* / RNA, U2 small nuclear 69, pseudogene*ENSDARG0000008143129
RF00004 / RNU2-44P* / RNU2-69P* / RNA, U2 small nuclear 44, pseudogene* / RNA, U2 small nuclear 69, pseudogene*ENSDARG0000008273425
RF00004ENSDARG0000008517424


Protein motifs (from Interpro)
Interpro ID Name
No match


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match