ENSDARG00000116556


Danio rerio

Features
Gene ID: ENSDARG00000116556
  
Biological name :im:7142702
  
Synonyms : im:7142702
  
Possible biological names infered from orthology : B cell CLL/lymphoma 11B / B cell leukemia/lymphoma 11B / BCL11B / Q99PV8 / Q9C0K0 / Rit1
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 4392687
Gene end: 4454794
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000153465
NCBI entrez gene - 100330974     See in Manteia.
swissprot - E7FAL0
ZFIN ID - ZDB-GENE-050411-48
Ensembl - ENSDARG00000116556
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BCL11BENSGALG00000031862Gallus gallus
 BCL11BENSG00000127152Homo sapiens
 Rit1ENSMUSG00000048251Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
bcl11aa / B cell CLL/lymphoma 11Aa / Q9QYE3* / BCL11A* / Q9H165* / B cell CLL/lymphoma 11A* / B-cell lymphoma/leukemia 11A *ENSDARG0000006135253
bcl11ab / B cell CLL/lymphoma 11Ab / Q9QYE3* / BCL11A* / Q9H165* / B cell CLL/lymphoma 11A* / B-cell lymphoma/leukemia 11A *ENSDARG0000006315351
znf296 / zinc finger protein 296 / E9Q6W4* / Q8WUU4* / Zfp296*ENSDARG0000007789720
bcl11ba / B cell CLL/lymphoma 11BaENSDARG0000006251010


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007165 signal transduction IBA
 biological_processGO:0022008 neurogenesis IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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