ENSG00000064042


Homo sapiens

Features
Gene ID: ENSG00000064042
  
Biological name :LIMCH1
  
Synonyms : LIM and calponin homology domains 1 / LIMCH1 / Q9UPQ0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: p13
Gene start: 41359607
Gene end: 41700044
  
Corresponding Affymetrix probe sets: 212325_at (Human Genome U133 Plus 2.0 Array)   212327_at (Human Genome U133 Plus 2.0 Array)   212328_at (Human Genome U133 Plus 2.0 Array)   232457_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000424825
Ensembl peptide - ENSP00000424645
Ensembl peptide - ENSP00000425222
Ensembl peptide - ENSP00000427311
Ensembl peptide - ENSP00000427045
Ensembl peptide - ENSP00000426353
Ensembl peptide - ENSP00000426334
Ensembl peptide - ENSP00000425631
Ensembl peptide - ENSP00000316891
Ensembl peptide - ENSP00000371172
Ensembl peptide - ENSP00000379840
Ensembl peptide - ENSP00000411020
Ensembl peptide - ENSP00000421242
Ensembl peptide - ENSP00000421656
Ensembl peptide - ENSP00000422864
Ensembl peptide - ENSP00000423355
Ensembl peptide - ENSP00000424437
NCBI entrez gene - 22998     See in Manteia.
OMIM - 617750
RefSeq - XM_017007905
RefSeq - XM_011513642
RefSeq - XM_011513643
RefSeq - XM_011513644
RefSeq - XM_011513645
RefSeq - XM_011513646
RefSeq - XM_011513648
RefSeq - XM_011513649
RefSeq - XM_011513651
RefSeq - XM_011513653
RefSeq - XM_011513654
RefSeq - XM_011513655
RefSeq - XM_011513656
RefSeq - XM_011513657
RefSeq - XM_011513658
RefSeq - XM_017007894
RefSeq - XM_017007895
RefSeq - XM_017007896
RefSeq - XM_017007897
RefSeq - XM_017007898
RefSeq - XM_017007899
RefSeq - XM_017007900
RefSeq - XM_017007901
RefSeq - XM_017007902
RefSeq - XM_017007903
RefSeq - XM_017007904
RefSeq - NM_001112717
RefSeq - NM_001112718
RefSeq - NM_001112719
RefSeq - NM_001112720
RefSeq - NM_001289122
RefSeq - NM_001289124
RefSeq - NM_001330786
RefSeq - NM_001330787
RefSeq - NM_001330790
RefSeq - NM_001330793
RefSeq - NM_001330982
RefSeq - NM_001330983
RefSeq - NM_014988
RefSeq - XM_005248057
RefSeq - XM_005248058
RefSeq - XM_005248060
RefSeq - XM_005248061
RefSeq - XM_005248067
RefSeq - XM_005248072
RefSeq - XM_005248074
RefSeq - XM_005248075
RefSeq - XM_006713996
RefSeq Peptide - NP_001276051
RefSeq Peptide - NP_001317716
RefSeq Peptide - NP_001317719
RefSeq Peptide - NP_001317722
RefSeq Peptide - NP_001317911
RefSeq Peptide - NP_001317912
RefSeq Peptide - NP_055803
RefSeq Peptide - NP_001106188
RefSeq Peptide - NP_001106189
RefSeq Peptide - NP_001106190
RefSeq Peptide - NP_001106191
RefSeq Peptide - NP_001276053
RefSeq Peptide - NP_001317601
RefSeq Peptide - NP_001317603
RefSeq Peptide - NP_001317715
swissprot - E7EPK0
swissprot - D6RJ93
swissprot - D6RGH8
swissprot - D6RD46
swissprot - G5EA03
swissprot - H0Y8P3
swissprot - D6R8Y0
swissprot - E9PDJ9
swissprot - Q6NVB9
swissprot - Q9UPQ0
Ensembl - ENSG00000064042
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 limch1aENSDARG00000074275Danio rerio
 limch1bENSDARG00000103774Danio rerio
 LIMCH1ENSGALG00000014258Gallus gallus
 Limch1ENSMUSG00000037736Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LMO7 / Q8WWI1 / LIM domain 7ENSG0000013615320


Protein motifs (from Interpro)
Interpro ID Name
 IPR001715  Calponin homology domain
 IPR001781  Zinc finger, LIM-type
 IPR001997  Calponin/LIMCH1
 IPR003096  Smooth muscle protein/calponin
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR029980  LIM and calponin homology domains-containing protein 1
 IPR031865  Domain of unknown function DUF4757
 IPR036872  CH domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0031032 actomyosin structure organization IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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