ENSG00000075891


Homo sapiens

Features
Gene ID: ENSG00000075891
  
Biological name :PAX2
  
Synonyms : paired box 2 / PAX2 / Q02962
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: q24.31
Gene start: 100735603
Gene end: 100829941
  
Corresponding Affymetrix probe sets: 206228_at (Human Genome U133 Plus 2.0 Array)   206229_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000398652
Ensembl peptide - ENSP00000396259
Ensembl peptide - ENSP00000452489
Ensembl peptide - ENSP00000347385
Ensembl peptide - ENSP00000355069
Ensembl peptide - ENSP00000359319
NCBI entrez gene - 5076     See in Manteia.
OMIM - 167409
RefSeq - XM_017016288
RefSeq - NM_003988
RefSeq - NM_003989
RefSeq - NM_003990
RefSeq - XM_017016281
RefSeq - XM_017016282
RefSeq - XM_017016283
RefSeq - XM_017016284
RefSeq - XM_017016285
RefSeq - XM_017016286
RefSeq - XM_017016287
RefSeq - NM_000278
RefSeq - NM_001304569
RefSeq - NM_003987
RefSeq Peptide - NP_003981
RefSeq Peptide - NP_000269
RefSeq Peptide - NP_001291498
RefSeq Peptide - NP_003978
RefSeq Peptide - NP_003979
RefSeq Peptide - NP_003980
swissprot - Q5SZP1
swissprot - Q02962
swissprot - G3V5S4
swissprot - A0A0A0MRH7
Ensembl - ENSG00000075891
  
Related genetic diseases (OMIM): 120330 - Papillorenal syndrome, 120330
  616002 - Glomerulosclerosis, focal segmental, 7, 616002

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pax2aENSDARG00000028148Danio rerio
 pax2bENSDARG00000032578Danio rerio
 PAX2ENSGALG00000005689Gallus gallus
 Pax2ENSMUSG00000004231Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PAX5 / Q02548 / paired box 5ENSG0000019609262
PAX8 / Q06710 / paired box 8ENSG0000012561856
PAX1 / P15863 / paired box 1ENSG0000012581337
PAX7 / P23759 / paired box 7ENSG0000000970936
PAX6 / P26367 / paired box 6ENSG0000000737235
PAX3 / P23760 / paired box 3ENSG0000013590335
PAX9 / P55771 / paired box 9ENSG0000019880732
PAX4 / O43316 / paired box 4ENSG0000010633128


Protein motifs (from Interpro)
Interpro ID Name
 IPR001523  Paired domain
 IPR009057  Homeobox-like domain superfamily
 IPR022130  Paired-box protein 2 C-terminal
 IPR036388  Winged helix-like DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001655 urogenital system development ISS
 biological_processGO:0001658 branching involved in ureteric bud morphogenesis ISS
 biological_processGO:0001709 cell fate determination ISS
 biological_processGO:0001823 mesonephros development ISS
 biological_processGO:0001843 neural tube closure ISS
 biological_processGO:0002072 optic cup morphogenesis involved in camera-type eye development ISS
 biological_processGO:0003337 mesenchymal to epithelial transition involved in metanephros morphogenesis ISS
 biological_processGO:0003406 retinal pigment epithelium development ISS
 biological_processGO:0006351 transcription, DNA-templated ISS
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007409 axonogenesis TAS
 biological_processGO:0007501 mesodermal cell fate specification ISS
 biological_processGO:0007568 aging IEA
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0010001 glial cell differentiation ISS
 biological_processGO:0021554 optic nerve development ISS
 biological_processGO:0021631 optic nerve morphogenesis ISS
 biological_processGO:0021633 optic nerve structural organization ISS
 biological_processGO:0021650 vestibulocochlear nerve formation ISS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0031667 response to nutrient levels IEA
 biological_processGO:0035566 regulation of metanephros size IMP
 biological_processGO:0035799 ureter maturation ISS
 biological_processGO:0039003 pronephric field specification ISS
 biological_processGO:0042472 inner ear morphogenesis ISS
 biological_processGO:0043010 camera-type eye development ISS
 biological_processGO:0043066 negative regulation of apoptotic process IMP
 biological_processGO:0043069 negative regulation of programmed cell death ISS
 biological_processGO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process IDA
 biological_processGO:0043491 protein kinase B signaling ISS
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IMP
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0045918 negative regulation of cytolysis IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II ISS
 biological_processGO:0048513 animal organ development IEA
 biological_processGO:0048793 pronephros development ISS
 biological_processGO:0048854 brain morphogenesis ISS
 biological_processGO:0048863 stem cell differentiation ISS
 biological_processGO:0050679 positive regulation of epithelial cell proliferation IDA
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0060231 mesenchymal to epithelial transition ISS
 biological_processGO:0061360 optic chiasma development ISS
 biological_processGO:0070301 cellular response to hydrogen peroxide ISS
 biological_processGO:0071300 cellular response to retinoic acid ISS
 biological_processGO:0071333 cellular response to glucose stimulus ISS
 biological_processGO:0071364 cellular response to epidermal growth factor stimulus IEA
 biological_processGO:0072075 metanephric mesenchyme development ISS
 biological_processGO:0072108 positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis ISS
 biological_processGO:0072162 metanephric mesenchymal cell differentiation ISS
 biological_processGO:0072179 nephric duct formation ISS
 biological_processGO:0072189 ureter development ISS
 biological_processGO:0072205 metanephric collecting duct development ISS
 biological_processGO:0072207 metanephric epithelium development IEP
 biological_processGO:0072221 metanephric distal convoluted tubule development ISS
 biological_processGO:0072289 metanephric nephron tubule formation ISS
 biological_processGO:0072300 positive regulation of metanephric glomerulus development ISS
 biological_processGO:0072305 negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis ISS
 biological_processGO:0072307 regulation of metanephric nephron tubule epithelial cell differentiation ISS
 biological_processGO:0072593 reactive oxygen species metabolic process ISS
 biological_processGO:0090102 cochlea development ISS
 biological_processGO:0090103 cochlea morphogenesis ISS
 biological_processGO:0090190 positive regulation of branching involved in ureteric bud morphogenesis ISS
 biological_processGO:1900212 negative regulation of mesenchymal cell apoptotic process involved in metanephros development ISS
 biological_processGO:1900215 negative regulation of apoptotic process involved in metanephric collecting duct development ISS
 biological_processGO:1900218 negative regulation of apoptotic process involved in metanephric nephron tubule development ISS
 biological_processGO:2000378 negative regulation of reactive oxygen species metabolic process IDA
 biological_processGO:2000594 positive regulation of metanephric DCT cell differentiation ISS
 biological_processGO:2000597 positive regulation of optic nerve formation ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005815 microtubule organizing center IDA
 cellular_componentGO:0032991 protein-containing complex ISS
 cellular_componentGO:0032993 protein-DNA complex ISS
 cellular_componentGO:0034451 centriolar satellite IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0000987 proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0016175 superoxide-generating NADPH oxidase activity ISS
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000085 Horseshoe kidney 
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 HP:0000089 Renal hypoplasia 
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 HP:0000093 Proteinuria 
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 HP:0000097 Focal segmental glomerulosclerosis 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000104 Renal agenesis 
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 HP:0000110 Renal dysplasia 
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 HP:0000148 Vaginal atresia 
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 HP:0000278 Retrognathia 
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 HP:0000316 Hypertelorism 
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 HP:0000365 Hearing loss 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000480 Retinal coloboma 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000533 Chorioretinal atrophy 
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 HP:0000541 Detached retina 
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 HP:0000545 Myopia 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000588 Optic nerve coloboma 
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 HP:0000608 Macular degeneration 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000786 Primary amenorrhea 
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 HP:0000787 Kidney stones 
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 HP:0000813 Bicornuate uterus 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
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 HP:0000974 Hyperextensible skin 
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 HP:0000977 Soft skin 
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 HP:0001093 Optic nerve dysplasia 
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 HP:0001144 Orbital cysts "Presence of cysts in the region of teh orbita. Orbital cysts can be derived from epithelial or glandular tissue within or surrounding the orbit (lacrimal glands, salivary glands, conjunctival, oral, nasal, or sinus epithelium)." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001388 Joint laxity 
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 HP:0001562 Oligohydramnios 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002009 Potter facies 
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 HP:0002089 Pulmonary hypoplasia 
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 HP:0002171 Gliosis 
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 HP:0003577 Onset at birth 
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 HP:0003593 Early onset 
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 HP:0003774 End stage renal disease 
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 HP:0003812 Phenotypic variability 
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 HP:0003828 Variable expressivity 
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 HP:0003829 Incomplete penetrance 
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 HP:0004712 Malrotation of the kidney 
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 HP:0005692 Joint hyperflexibility 
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 HP:0007099 Arnold-Chiari type I malformation "Arnold-Chiari type I malformation refers to a relatively mild degree of herniation of the posteroinferior region of the cerebellum (the cerebellar tonsils) into the cervical canal with little or no displacement of the fourth ventricle." [HPO:curators]
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 HP:0011509 Macular hyperpigmentation "Increased amount of pigmentation in the `macula lutea` (FMA:58637)." [DDD:ncarter]
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 HP:0012019 Lens luxation "Complete dislocation of the lens of the eye." [HPO:probinson]
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 HP:0025514 Morning glory anomaly "An abnormality of the optic nerve in which the optic nerve is large and funneled and displays a conical excavation of the optic disc. The optic disc appears dysplastic." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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