ENSG00000102805


Homo sapiens

Features
Gene ID: ENSG00000102805
  
Biological name :CLN5
  
Synonyms : CLN5 / CLN5, intracellular trafficking protein / O75503
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: 1
Band: q22.3
Gene start: 76990660
Gene end: 77019143
  
Corresponding Affymetrix probe sets: 204084_s_at (Human Genome U133 Plus 2.0 Array)   204085_s_at (Human Genome U133 Plus 2.0 Array)   214252_s_at (Human Genome U133 Plus 2.0 Array)   236446_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000366673
Ensembl peptide - ENSP00000490937
Ensembl peptide - ENSP00000490560
Ensembl peptide - ENSP00000490422
Ensembl peptide - ENSP00000490181
Ensembl peptide - ENSP00000490078
Ensembl peptide - ENSP00000489922
Ensembl peptide - ENSP00000489855
Ensembl peptide - ENSP00000489809
Ensembl peptide - ENSP00000489711
Ensembl peptide - ENSP00000482959
Ensembl peptide - ENSP00000479547
NCBI entrez gene - 1203     See in Manteia.
OMIM - 608102
RefSeq - NM_006493
RefSeq - XM_011534917
RefSeq Peptide - NP_006484
swissprot - A0A1B0GUE8
swissprot - A0A1B0GU14
swissprot - A0A1B0GTV7
swissprot - A0A1B0GTR6
swissprot - A0A1C7CYZ2
swissprot - A0A0A0MRU5
swissprot - A0A087WZY0
swissprot - A0A024R644
swissprot - O75503
swissprot - A0A1B0GTI0
swissprot - A0A1B0GWI2
swissprot - A0A1B0GVL0
swissprot - A0A1B0GV94
Ensembl - ENSG00000102805
  
Related genetic diseases (OMIM): 256731 - Ceroid lipofuscinosis, neuronal, 5, 256731
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cln5ENSDARG00000076339Danio rerio
 CLN5ENSGALG00000016917Gallus gallus
 Cln5ENSMUSG00000022125Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC001226.2ENSG0000028320848


Protein motifs (from Interpro)
Interpro ID Name
 IPR026138  Ceroid-lipofuscinosis neuronal protein 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006465 signal peptide processing IDA
 biological_processGO:0007042 lysosomal lumen acidification IMP
 biological_processGO:0007420 brain development IEP
 biological_processGO:0022008 neurogenesis IEP
 biological_processGO:0030163 protein catabolic process NAS
 biological_processGO:0042147 retrograde transport, endosome to Golgi IMP
 biological_processGO:0042551 neuron maturation NAS
 biological_processGO:0070085 glycosylation IDA
 biological_processGO:1904426 positive regulation of GTP binding IMP
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane IDA
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005537 mannose binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000529 Progressive visual loss 
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 HP:0000546 Retinal degeneration 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001310 Dysmetria 
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 HP:0001311 Neurophysiological abnormality 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0002074 Autofluorescent lipopigment in neurons 
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 HP:0002075 Dysdiadochokinesis "An inability to perform rapidly alternating movements, such as rhythmically tapping the fingers on the knee, generally related to a cerebellar lesion." [HPO:curators]
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 HP:0002312 Clumsiness 
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 HP:0002333 Motor deterioration 
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 HP:0002376 Developmental regression 
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 HP:0003205 Curvilinear profiles ultrastructurally 
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 HP:0003208 Fingerprint profiles ultrastructurally 
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 HP:0003226 Rectilinear profiles ultrastructurally 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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