ENSG00000111786


Homo sapiens
mrnaSRSF9rnasplicingbindingrecognitionmotifdomainprocessingnucleussrsfviaspliceosometerminationexportresponse-endproteintranscriptrna-bindingsuperfamilypolymeraseiitranscriptionsplicesiteselectiontoxicsubstancealkaloidregulation

Features
Gene ID: ENSG00000111786
  
Biological name :SRSF9
  
Synonyms : Q13242 / serine and arginine rich splicing factor 9 / SRSF9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: q24.31
Gene start: 120461668
Gene end: 120469793
  
Corresponding Affymetrix probe sets: 200044_at (Human Genome U133 Plus 2.0 Array)   201698_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000449030
Ensembl peptide - ENSP00000229390
Ensembl peptide - ENSP00000474283
NCBI entrez gene - 8683     See in Manteia.
OMIM - 601943
RefSeq - NM_003769
RefSeq Peptide - NP_003760
swissprot - S4R3G0
swissprot - H0YIB4
swissprot - Q13242
Ensembl - ENSG00000111786
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srsf9ENSDARG00000008097Danio rerio
 Srsf9ENSMUSG00000029538Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SRSF1 / Q07955 / serine and arginine rich splicing factor 1ENSG0000013645071
SRSF6 / Q13247 / serine and arginine rich splicing factor 6ENSG0000012419341
SRSF4 / Q08170 / serine and arginine rich splicing factor 4ENSG0000011635040
SRSF5 / Q13243 / serine and arginine rich splicing factor 5ENSG0000010065036


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034503  SRSF9, RNA recognition motif 1
 IPR034995  SRSF9, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
nitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationcellular component biogenesismacromolecule localizationestablishment of localizationcellular localizationprotein-containing complex localizationresponse to chemicalnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationcellular component biogenesismacromolecule localizationestablishment of localizationcellular localizationprotein-containing complex localizationresponse to chemicalnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationcellular component biogenesismacromolecule localizationestablishment of localizationcellular localizationprotein-containing complex localizationresponse to chemicalnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationcellular component biogenesismacromolecule localizationestablishment of localizationcellular localizationprotein-containing complex localizationresponse to chemicalnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationcellular component biogenesismacromolecule localizationestablishment of localizationcellular localizationprotein-containing complex localizationresponse to chemicalnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationcellular component biogenesismacromolecule localizationestablishment of localizationcellular localizationprotein-containing complex localizationresponse to chemicalnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationcellular component biogenesismacromolecule localizationestablishment of localizationcellular localizationprotein-containing complex localizationresponse to chemicalnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationcellular component biogenesismacromolecule localizationestablishment of localizationcellular localizationprotein-containing complex localizationresponse to chemicalnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationcellular component biogenesismacromolecule localizationestablishment of localizationcellular localizationprotein-containing complex localizationresponse to chemicalnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processcellular component organizationcellular component biogenesismacromolecule localizationestablishment of localizationcellular localizationprotein-containing complex localizationresponse to chemicalnitrogen conitrogen compound metabolic processcellular mecellular metabolic processprimary metprimary metabolic processorganic suborganic substance metabolic processbiosynthetibiosynthetic processcellular cocellular component organizationcellular cocellular component biogenesismacromolecumacromolecule localizationestablishmeestablishment of localizationcellular locellular localizationprotein-conprotein-containing complex localizationresponse toresponse to chemical
organic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound bindingprotein bindingprotein binding
cellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellcellorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumen
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006376 mRNA splice site selection TAS
 biological_processGO:0006397 mRNA processing TAS
 biological_processGO:0006405 RNA export from nucleus TAS
 biological_processGO:0006406 mRNA export from nucleus TAS
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0009636 response to toxic substance IEA
 biological_processGO:0031124 mRNA 3"-end processing TAS
 biological_processGO:0043279 response to alkaloid IEA
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019904 protein domain specific binding IPI


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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