ENSG00000112238


Homo sapiens

Features
Gene ID: ENSG00000112238
  
Biological name :PRDM13
  
Synonyms : PRDM13 / PR/SET domain 13 / Q9H4Q3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: q16.2
Gene start: 99606730
Gene end: 99615578
  
Corresponding Affymetrix probe sets: 221168_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000358216
Ensembl peptide - ENSP00000358217
NCBI entrez gene - 59336     See in Manteia.
OMIM - 616741
RefSeq - NM_021620
RefSeq Peptide - NP_067633
swissprot - A0A0A0MRL5
swissprot - Q9H4Q3
Ensembl - ENSG00000112238
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prdm13ENSDARG00000078701Danio rerio
 PRDM13ENSGALG00000038476Gallus gallus
 E9PZZ1ENSMUSG00000040478Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PRDM16 / Q9HAZ2 / PR/SET domain 16ENSG0000014261116
MECOM / Q03112 / MDS1 and EVI1 complex locusENSG0000008527615
Q96EG3 / ZNF837 / zinc finger protein 837ENSG0000015247512


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR013087  Zinc finger C2H2-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0016571 histone methylation IEA
 biological_processGO:0022008 neurogenesis IEA
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0042054 histone methyltransferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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