ENSG00000124788


Homo sapiens

Features
Gene ID: ENSG00000124788
  
Biological name :ATXN1
  
Synonyms : ataxin 1 / ATXN1 / P54253
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: p22.3
Gene start: 16299112
Gene end: 16761491
  
Corresponding Affymetrix probe sets: 1559249_at (Human Genome U133 Plus 2.0 Array)   203231_s_at (Human Genome U133 Plus 2.0 Array)   203232_s_at (Human Genome U133 Plus 2.0 Array)   230507_at (Human Genome U133 Plus 2.0 Array)   242230_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000244769
Ensembl peptide - ENSP00000416360
Ensembl peptide - ENSP00000493530
NCBI entrez gene - 6310     See in Manteia.
OMIM - 601556
RefSeq - NM_001128164
RefSeq - NM_000332
RefSeq - NM_001357857
RefSeq Peptide - NP_000323
RefSeq Peptide - NP_001121636
RefSeq Peptide - NP_001344786
swissprot - P54253
Ensembl - ENSG00000124788
  
Related genetic diseases (OMIM): 164400 - Spinocerebellar ataxia 1, 164400
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atxn1aENSDARG00000061687Danio rerio
 atxn1bENSDARG00000060862Danio rerio
 ATXN1ENSGALG00000012709Gallus gallus
 Atxn1ENSMUSG00000046876Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ATXN1L / P0C7T5 / ataxin 1 likeENSG0000022447026


Protein motifs (from Interpro)
Interpro ID Name
 IPR003652  Ataxin, AXH domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR020997  Capicua transcriptional repressor modulator, Ataxin-1
 IPR036096  Ataxin, AXH domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006396 RNA processing NAS
 biological_processGO:0007420 brain development ISS
 biological_processGO:0007612 learning ISS
 biological_processGO:0007613 memory ISS
 biological_processGO:0035176 social behavior ISS
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0051168 nuclear export IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0016363 nuclear matrix IDA
 cellular_componentGO:0042272 nuclear RNA export factor complex IDA
 cellular_componentGO:0042405 nuclear inclusion body IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IPI
 molecular_functionGO:0008266 poly(U) RNA binding IDA
 molecular_functionGO:0034046 poly(G) binding IDA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0043621 protein self-association IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000514 Slow saccades 
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 HP:0000543 Pale optic disks 
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 HP:0000597 Ophthalmoparesis "Ophthalmoplegia is a paralysis or weakness of one or more of the muscles that control eye movement." [HPO:curators]
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 HP:0000623 Supranuclear ophthalmoplegia 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000640 Gaze-evoked nystagmus "Nystagmus made apparent by looking to the right or to the left." [HPO:curators]
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 HP:0000641 Dysmetric saccades 
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 HP:0000648 Optic atrophy 
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 HP:0001151 Impaired horizontal smooth pursuit "An `abnormality of ocular smooth pursuit` (HP:0000617) characterized by an impairment of the ability to track horizontally moving objects." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001283 Bulbar palsy "Bulbar weakness (or bulbar palsy) refers to bilateral impairment of function of the lower cranial nerves IX, X, XI and XII, which occurs due to lower motor neuron lesion either at nuclear or fascicular level in the medulla or from bilateral lesions of the lower cranial nerves outside the brain-stem. Bulbar weakness is often associated with difficulty in chewing, weakness of the facial muscles, dysarthria, palatal weakness and regurgitation of fluids, dysphagia, and dysphonia." [HPO:curators]
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 HP:0001284 Areflexia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001310 Dysmetria 
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001350 Slurred speech 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002067 Bradykinesia "Bradykinesia literally means slow movement, and is used clinically to denote a slowness in the execution of movement (in contrast to hypokinesia, which is used to refer to slowness in the initiation of movement)." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002071 Extrapyramidal signs 
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 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
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 HP:0002073 Progressive cerebellar ataxia 
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 HP:0002075 Dysdiadochokinesis "An inability to perform rapidly alternating movements, such as rhythmically tapping the fingers on the knee, generally related to a cerebellar lesion." [HPO:curators]
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 HP:0002078 Truncal ataxia 
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 HP:0002141 Gait imbalance 
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 HP:0002168 Scanning speech 
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 HP:0002174 Postural tremor "A type of tremors that is triggered by holding a limb in a fixed position." [HPO:curators]
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 HP:0002198 Enlarged fourth ventricle 
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 HP:0002354 Memory impairment 
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 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
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 HP:0002483 Bulbar signs 
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 HP:0002495 Impaired vibratory sense "A decrease in the ability to perceive vibration. Clinically, this is usually tested with a tuning fork which vibrates at 128 Hz and is applied to bony prominences such as the malleoli at the ankles or the metacarpal-phalangeal joints. There is a slow decay of vibration from the tuning fork. The degree of vibratory sense loss can be crudely estimated by counting the number of seconds that the examiner can perceive the vibration longer than the patient." [HPO:curators]
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 HP:0002503 Spinocerebellar tract degeneration 
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 HP:0002542 Olivopontocerebellar atrophy 
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 HP:0002839 Sphincter disturbances (bladder) 
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 HP:0002878 Early respiratory failure 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003431 Decreased motor nerve conduction velocity (NCV) 
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 HP:0003448 Decreased sensory nerve conduction velocities (NCV) 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003581 Onset in adulthood 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0003744 Paternal anticipation bias 
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 HP:0006801 Hyperactive deep tendon reflexes 
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 HP:0007001 Loss of purkinje cells in the cerebellar vermis 
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 HP:0007006 Dorsal column and spinocerebellar tract degeneration 
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 HP:0007078 Decreased or absent sensory nerve action potentials 
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 HP:0007263 Spinocerebellar atrophy 
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 HP:0007338 Hypermetric saccades 
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 HP:0007366 Atrophy/Degeneration affecting the brainstem 
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 HP:0007377 Abnormality of somatosensory evoked potentials "An abnormality of somatosensory evoked potentials (SSEP), i.e., of the electrical signals of sensation going from the body to the brain in response to a defined stimulus. Recording electrodes are placed over the scalp, spine, and peripheral nerves proximal to the stimulation site. Clinical studies generally use electrical stimulation of peripheral nerves to elicit potentials. SSEP testing determines whether peripheral sensory nerves are able to transmit sensory information like pain, temperature, and touch to the brain. Abnormal SSEPs can result from dysfunction at the level of the peripheral nerve, plexus, spinal root, spinal cord, brain stem, thalamocortical projections, or primary somatosensory cortex." [HPO:curators]
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 HP:0007928 Abnormal flash visual evoked potentials 
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 HP:0010831 Impaired proprioception "A loss or impairment of the sensation of the relative position of parts of the body and joint position." [HPO:probinson]
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 HP:0025331 Upgaze palsy "A limitation of the ability to direct one s gaze above the horizontal meridian." []
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 HP:0025401 Staring gaze "An abnormality in which the eyes are held permanently wide open." [PMID:22675666]
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 HP:0030216 Inertia "Reduction of goal-directed behaviors linked to the impairment in frontal executive functions (planning of an action for example)." [ICM:PCaroppo]
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 HP:0040129 Abnormal nerve conduction velocity 
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0410011 Abnormality of masticatory muscle "Any abnormality of the masticatory muscle." [orcid.org/0000-0001-5208-3432]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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