ENSG00000126524


Homo sapiens

Features
Gene ID: ENSG00000126524
  
Biological name :SBDS
  
Synonyms : Q9Y3A5 / SBDS / SBDS, ribosome maturation factor
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q11.21
Gene start: 66987677
Gene end: 66995601
  
Corresponding Affymetrix probe sets: 1554089_s_at (Human Genome U133 Plus 2.0 Array)   222669_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000246868
Ensembl peptide - ENSP00000483040
Ensembl peptide - ENSP00000394586
NCBI entrez gene - 51119     See in Manteia.
OMIM - 607444
RefSeq - NM_016038
RefSeq Peptide - NP_057122
swissprot - Q9Y3A5
swissprot - F8WE72
swissprot - A0A087X020
swissprot - A0A0S2Z5I7
Ensembl - ENSG00000126524
  
Related genetic diseases (OMIM): 260400 - Shwachman-Diamond syndrome, 260400
  609135 - {Aplastic anemia, susceptibility to}, 609135
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sbdsENSDARG00000027803Danio rerio
 SBDSENSGALG00000027989Gallus gallus
 SbdsENSMUSG00000025337Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002140  Ribosome maturation protein Sdo1/SBDS
 IPR018023  Ribosome maturation protein SBDS, conserved site
 IPR018978  Ribosome maturation protein SBDS, C-terminal
 IPR019783  Ribosome maturation protein SBDS, N-terminal
 IPR036786  Ribosome maturation protein SBDS, N-terminal domain superfamily
 IPR037188  Ribosome maturation protein Sdo1/SBDS, central domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001833 inner cell mass cell proliferation IEA
 biological_processGO:0006364 rRNA processing IMP
 biological_processGO:0007052 mitotic spindle organization IDA
 biological_processGO:0008283 cell proliferation IMP
 biological_processGO:0030282 bone mineralization IMP
 biological_processGO:0030595 leukocyte chemotaxis IDA
 biological_processGO:0042254 ribosome biogenesis IEA
 biological_processGO:0042256 mature ribosome assembly IEA
 biological_processGO:0048539 bone marrow development IMP
 cellular_componentGO:0000922 spindle pole IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005819 spindle IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008017 microtubule binding IDA
 molecular_functionGO:0019843 rRNA binding IDA
 molecular_functionGO:0043022 ribosome binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000121 Nephrocalcinosis 
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 HP:0000670 Carious teeth 
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 HP:0000691 Microdontia 
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0000774 Narrow chest 
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 HP:0000907 Anterior rib cupping 
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 HP:0000920 Enlargement of the costochondral junction 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001508 Failure to thrive 
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 HP:0001518 Low birth weight 
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 HP:0001700 Myocardial necrosis 
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 HP:0001738 Exocrine pancreatic insufficiency 
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 HP:0001873 Thrombocytopenia 
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 HP:0001875 Neutropenia 
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 HP:0001876 Pancytopenia 
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 HP:0001903 Anemia 
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 HP:0001915 Aplastic anemia 
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 HP:0002024 Malabsorption 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002570 Steatorrhea 
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 HP:0002643 Neonatal respiratory distress 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002719 Recurrent infections 
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002812 Coxa vara 
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 HP:0002863 Myelodysplasia 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003016 Metaphyseal widening "Abnormal widening of the metaphyseal regions of long bones." [HPO:curators]
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 HP:0003300 Ovoid vertebral bodies 
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 HP:0003411 Irregular proximal femoral metaphyses 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004808 Acute myeloid leukemia "A form of leukemia characterized by overproduction of an early myeloid cell." [HPO:curators]
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 HP:0004979 Sclerotic, widened metaphyses 
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 HP:0005528 Bone marrow hypoplasia 
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 HP:0005871 Metaphyseal chondrodysplasia 
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 HP:0006461 Proximal femoral epiphysiolysis "Slipped capital femoral epiphysis is defined as a posterior and inferior slippage of the proximal femoral epiphysis on the metaphysis (femoral neck), occurring through the physeal plate during the early adolescent growth spurt." [HPO:curators]
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 HP:0006598 Irregular ossification at anterior rib ends 
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0008803 Narrow sacroiliac notch 
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 HP:0010306 Short thorax "Reduced inferior to superior extent of the thorax." [HPO:curators]
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 HP:0011107 Recurrent aphthous stomatitis "Recurrent episodes of ulceration of the oral mucosa." [HPO:probinson]
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 HP:0011904 Persistence of hemoglobin F "Hemoglobin F (HbF) contains two globin alpha chains and two globin gamma chains. It is the main form of hemoglobin in the fetus during the last seven months of intrauterine development and in the half year of postnatal life. In adults it normally makes up less than one percent of all hemoglobiin. This term refers to an increase in HbF above this limit. In beta thalassemia major, it may represent over 90 percent of all hemoglobin, and in beta thalassemia minor it may make up between 0.5 to 4 percent." [HPO:probinson]
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 HP:0100651 Diabetes mellitus Type I 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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