ENSG00000133111


Homo sapiens

Features
Gene ID: ENSG00000133111
  
Biological name :RFXAP
  
Synonyms : O00287 / regulatory factor X associated protein / RFXAP
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: 1
Band: q13.3
Gene start: 36819224
Gene end: 36829104
  
Corresponding Affymetrix probe sets: 208492_at (Human Genome U133 Plus 2.0 Array)   229431_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000255476
NCBI entrez gene - 5994     See in Manteia.
OMIM - 601861
RefSeq - NM_000538
RefSeq Peptide - NP_000529
swissprot - O00287
Ensembl - ENSG00000133111
  
Related genetic diseases (OMIM): 209920 - Bare lymphocyte syndrome, type II, complementation group D, 209920

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rfxapENSDARG00000076891Danio rerio
 RFXAPENSGALG00000019087Gallus gallus
 RfxapENSMUSG00000036615Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR029316  Regulatory factor X-associated protein, RFXANK-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0016607 nuclear speck IDA
 molecular_functionGO:0003677 DNA binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity NAS
 molecular_functionGO:0003713 transcription coactivator activity TAS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0001080 Biliary tract abnormality 
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 HP:0001508 Failure to thrive 
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 HP:0001875 Neutropenia 
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 HP:0002024 Malabsorption 
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 HP:0002383 Encephalitis 
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 HP:0002583 Severe colitis 
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 HP:0002718 Recurrent bacterial infections 
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 HP:0002728 Chronic mucocutaneous candidiasis 
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 HP:0002783 Recurrent lower respiratory tract infections 
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 HP:0002788 Recurrent upper respiratory tract infections 
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 HP:0002841 Fungal infections, recurrent 
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 HP:0002965 Cutaneous anergy 
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 HP:0003139 Panhypogammaglobulinemia 
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 HP:0004385 Protracted diarrhea 
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 HP:0004429 Recurrent viral infections 
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 HP:0004432 Agammaglobulinemia 
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 HP:0005386 Frequent bacterial, viral, protozoan, and fungal infections 
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 HP:0006562 Viral hepatitis 
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 HP:0007041 Chronic lymphocytic meningitis 
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 HP:0011473 Villous atrophy "The enteric villi are atrophic or absent." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr