ENSG00000136425


Homo sapiens

Features
Gene ID: ENSG00000136425
  
Biological name :CIB2
  
Synonyms : calcium and integrin binding family member 2 / CIB2 / O75838
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q25.1
Gene start: 78104606
Gene end: 78131544
  
Corresponding Affymetrix probe sets: 205007_s_at (Human Genome U133 Plus 2.0 Array)   205008_s_at (Human Genome U133 Plus 2.0 Array)   214065_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494155
Ensembl peptide - ENSP00000453654
Ensembl peptide - ENSP00000453963
Ensembl peptide - ENSP00000258930
Ensembl peptide - ENSP00000442459
Ensembl peptide - ENSP00000452752
Ensembl peptide - ENSP00000452980
Ensembl peptide - ENSP00000453256
Ensembl peptide - ENSP00000453377
Ensembl peptide - ENSP00000453488
NCBI entrez gene - 10518     See in Manteia.
OMIM - 605564
RefSeq - XM_011521161
RefSeq - NM_001271888
RefSeq - NM_001271889
RefSeq - NM_001301224
RefSeq - NM_006383
RefSeq - XM_005254126
RefSeq - XM_006720374
RefSeq Peptide - NP_006374
RefSeq Peptide - NP_001258817
RefSeq Peptide - NP_001258818
RefSeq Peptide - NP_001288153
swissprot - H0YND4
swissprot - H0YKX8
swissprot - H0YLL7
swissprot - H0YLX3
swissprot - O75838
swissprot - H0YKC8
swissprot - H0YML3
Ensembl - ENSG00000136425
  
Related genetic diseases (OMIM): 609439 - Deafness, autosomal recessive 48, 609439
  614869 - Usher syndrome, type IJ, 614869
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cib2ENSDARG00000102820Danio rerio
 CIB2ENSGALG00000026674Gallus gallus
 Cib2ENSMUSG00000037493Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CIB3 / Q96Q77 / calcium and integrin binding family member 3ENSG0000014197760
CIB1 / Q99828 / calcium and integrin binding 1ENSG0000018504336
CIB4 / A0PJX0 / calcium and integrin binding family member 4ENSG0000015788435


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007204 positive regulation of cytosolic calcium ion concentration IDA
 biological_processGO:0045494 photoreceptor cell maintenance ISS
 biological_processGO:0055074 calcium ion homeostasis ISS
 biological_processGO:0071318 cellular response to ATP IDA
 cellular_componentGO:0001750 photoreceptor outer segment ISS
 cellular_componentGO:0001917 photoreceptor inner segment ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005927 muscle tendon junction IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031594 neuromuscular junction IEA
 cellular_componentGO:0032420 stereocilium IEA
 cellular_componentGO:0032437 cuticular plate IDA
 cellular_componentGO:0042383 sarcolemma IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0072562 blood microparticle HDA
 molecular_functionGO:0000287 magnesium ion binding IDA
 molecular_functionGO:0005178 integrin binding IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000375 Abnormality of cochlea "An abnormality of the cochlea, which is an inner ear structure comprised of a snail-shell like structure divided into three fluid-filled parts. Two are canals for the transmission of pressure and in the third is the organ of Corti, which detects pressure impulses and responds with electrical impulses which travel along the auditory nerve to the brain." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000572 Visual loss 
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 HP:0000575 Scotoma "Scotoma refers to an area or island of loss or impairment of visual acuity surrounded by a field of normal or relatively well-preserved vision." [HPO:curators]
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 HP:0000662 Night blindness 
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000738 Hallucinations 
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 HP:0000739 Anxiety 
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001751 Vestibular dysfunction 
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 HP:0001756 Vestibular hypofunction 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0003577 Onset at birth 
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0008499 High-grade hypermetropia 
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 HP:0011476 Profound sensorineural hearing impairment "Complete loss of hearing related to a sensorineural defect." [DDD:dfitzpatrick]
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 HP:0012157 Subcortical cerebral atrophy "Atrophy of the cerebral subcortical white and gray matter, termed subcortical atrophy, reflects loss of nerve cells in the basal ganglia or fibers in the deep white matter." [HPO:probinson, pmid:20813998]
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 HP:0012377 Hemianopsia "Partial or complete loss of vision in one half of the visual field of one or both eyes." [HPO:probinson]
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 HP:0100753 Schizophrenia "A mental disorder characterized by a disintegration of thought processes and of emotional responsiveness. It most commonly manifests as auditory hallucinations, paranoid or bizarre delusions, or disorganized speech and thinking, and it is accompanied by significant social or occupational dysfunction. The onset of symptoms typically occurs in young adulthood, with a global lifetime prevalence of about 0.3-0.7%." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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