ENSG00000136908


Homo sapiens
proteinmembraneDPM2gpiactivityendoplasmicreticulumhypoplasiadolicholglycosylationanchorprocessregulationcomplexintegralcomponentdolichyl-phosphatesynthesisdpmphosphate-mannosebiosynthesisregulatorybiosyntheticpreassemblyern-linkedviaasparaginemetabolicstabilityo-linked

Features
Gene ID: ENSG00000136908
  
Biological name :DPM2
  
Synonyms : dolichyl-phosphate mannosyltransferase subunit 2, regulatory / DPM2 / O94777
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: q34.11
Gene start: 127935099
Gene end: 127938484
  
Corresponding Affymetrix probe sets: 209391_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000322181
Ensembl peptide - ENSP00000362202
NCBI entrez gene - 8818     See in Manteia.
OMIM - 603564
RefSeq - NM_003863
RefSeq Peptide - NP_003854
swissprot - O94777
swissprot - Q5T9C7
Ensembl - ENSG00000136908
  
Related genetic diseases (OMIM): 615042 - Congenital disorder of glycosylation, type Iu, 615042
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dpm2ENSDARG00000095623Danio rerio
 DPM2ENSGALG00000005066Gallus gallus
 Dpm2ENSMUSG00000026810Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009914  Dolichol phosphate-mannose biosynthesis regulatory


Gene Ontology (GO)
nitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processglycosylationsmall molecule metabolic processregulation of biological qualityregulation of molecular functionnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processglycosylationsmall molecule metabolic processregulation of biological qualityregulation of molecular functionnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processglycosylationsmall molecule metabolic processregulation of biological qualityregulation of molecular functionnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processglycosylationsmall molecule metabolic processregulation of biological qualityregulation of molecular functionnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processglycosylationsmall molecule metabolic processregulation of biological qualityregulation of molecular functionnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processglycosylationsmall molecule metabolic processregulation of biological qualityregulation of molecular functionnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processglycosylationsmall molecule metabolic processregulation of biological qualityregulation of molecular functionnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processglycosylationsmall molecule metabolic processregulation of biological qualityregulation of molecular functionnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processglycosylationsmall molecule metabolic processregulation of biological qualityregulation of molecular functionnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processglycosylationsmall molecule metabolic processregulation of biological qualityregulation of molecular functionnitrogen compounitrogen compound metabolic processbiosynthetic prbiosynthetic processcellular metabocellular metabolic processprimary metabolprimary metabolic processorganic substanorganic substance metabolic processglycosylationglycosylationsmall molecule small molecule metabolic processregulation of bregulation of biological qualityregulation of mregulation of molecular function
transferase activityprotein bindingenzyme regulator activitytransferase activityprotein bindingenzyme regulator activitytransferase activityprotein bindingenzyme regulator activitytransferase activityprotein bindingenzyme regulator activitytransferase activityprotein bindingenzyme regulator activitytransferase activityprotein bindingenzyme regulator activitytransferase activityprotein bindingenzyme regulator activitytransferase activityprotein bindingenzyme regulator activitytransferase activityprotein bindingenzyme regulator activitytransferase activityprotein bindingenzyme regulator activitytransferase activitytransferase activityprotein bindingprotein bindingenzyme regulator activityenzyme regulator activity
cellmembraneprotein-containing complexorganellecellmembraneprotein-containing complexorganellecellmembraneprotein-containing complexorganellecellmembraneprotein-containing complexorganellecellmembraneprotein-containing complexorganellecellmembraneprotein-containing complexorganellecellmembraneprotein-containing complexorganellecellmembraneprotein-containing complexorganellecellmembraneprotein-containing complexorganellecellmembraneprotein-containing complexorganellecellcellmembranemembraneprotein-containing complexprotein-containing complexorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0006486 protein glycosylation IEA
 biological_processGO:0006506 GPI anchor biosynthetic process IDA
 biological_processGO:0016254 preassembly of GPI anchor in ER membrane TAS
 biological_processGO:0018279 protein N-linked glycosylation via asparagine TAS
 biological_processGO:0019348 dolichol metabolic process IEA
 biological_processGO:0031647 regulation of protein stability IPI
 biological_processGO:0035269 protein O-linked mannosylation TAS
 biological_processGO:0050790 regulation of catalytic activity IEA
 cellular_componentGO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex TAS
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030176 integral component of endoplasmic reticulum membrane IEA
 cellular_componentGO:0033185 dolichol-phosphate-mannose synthase complex IDA
 molecular_functionGO:0004582 dolichyl-phosphate beta-D-mannosyltransferase activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030234 enzyme regulator activity IEA


Pathways (from Reactome)
Pathway description
Synthesis of dolichyl-phosphate mannose
Synthesis of glycosylphosphatidylinositol (GPI)
Defective DPM2 causes DPM2-CDG (CDG-1u)


Phenotype (from MGI, Zfin or HPO)
Autosomal recessive inheritanceHead and neck abnormalityAbnormality of the musculoskeletal systemAbnormality of the eyesNeurological abnormalityMortality/AgingAbnormality of musculatureAbnormality of connective tissueMetabolism abnormalityAge of onsetAbnormality of the digestive systemAutosomal recessive inheritanceHead and neck abnormalityAbnormality of the musculoskeletal systemAbnormality of the eyesNeurological abnormalityMortality/AgingAbnormality of musculatureAbnormality of connective tissueMetabolism abnormalityAge of onsetAbnormality of the digestive systemAutosomal recessive inheritanceHead and neck abnormalityAbnormality of the musculoskeletal systemAbnormality of the eyesNeurological abnormalityMortality/AgingAbnormality of musculatureAbnormality of connective tissueMetabolism abnormalityAge of onsetAbnormality of the digestive systemAutosomal recessive inheritanceHead and neck abnormalityAbnormality of the musculoskeletal systemAbnormality of the eyesNeurological abnormalityMortality/AgingAbnormality of musculatureAbnormality of connective tissueMetabolism abnormalityAge of onsetAbnormality of the digestive systemAutosomal recessive inheritanceHead and neck abnormalityAbnormality of the musculoskeletal systemAbnormality of the eyesNeurological abnormalityMortality/AgingAbnormality of musculatureAbnormality of connective tissueMetabolism abnormalityAge of onsetAbnormality of the digestive systemAutosomal recessive inheritanceHead and neck abnormalityAbnormality of the musculoskeletal systemAbnormality of the eyesNeurological abnormalityMortality/AgingAbnormality of musculatureAbnormality of connective tissueMetabolism abnormalityAge of onsetAbnormality of the digestive systemAutosomal recessive inheritanceHead and neck abnormalityAbnormality of the musculoskeletal systemAbnormality of the eyesNeurological abnormalityMortality/AgingAbnormality of musculatureAbnormality of connective tissueMetabolism abnormalityAge of onsetAbnormality of the digestive systemAutosomal recessive inheritanceHead and neck abnormalityAbnormality of the musculoskeletal systemAbnormality of the eyesNeurological abnormalityMortality/AgingAbnormality of musculatureAbnormality of connective tissueMetabolism abnormalityAge of onsetAbnormality of the digestive systemAutosomal recessive inheritanceHead and neck abnormalityAbnormality of the musculoskeletal systemAbnormality of the eyesNeurological abnormalityMortality/AgingAbnormality of musculatureAbnormality of connective tissueMetabolism abnormalityAge of onsetAbnormality of the digestive systemAutosomal recessive inheritanceHead and neck abnormalityAbnormality of the musculoskeletal systemAbnormality of the eyesNeurological abnormalityMortality/AgingAbnormality of musculatureAbnormality of connective tissueMetabolism abnormalityAge of onsetAbnormality of the digestive systemAutosomal reAutosomal recessive inheritanceHead and necHead and neck abnormalityAbnormality Abnormality of the musculoskeletal systemAbnormality Abnormality of the eyesNeurologicalNeurological abnormalityMortality/AgMortality/AgingAbnormality Abnormality of musculatureAbnormality Abnormality of connective tissueMetabolism aMetabolism abnormalityAge of onsetAge of onsetAbnormality Abnormality of the digestive system
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000219 Thin upper lip 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000601 Hypotelorism 
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 HP:0000648 Optic atrophy 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001522 Death in infancy 
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 HP:0002058 Myopathic facies "A facial appearance characteristic of myopathic conditions. The face appears expressionless with sunken cheeks, bilateral ptosis, and inability to elevate the corners of the mouth, due to muscle weakness." [HPO:curators]
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 HP:0002476 Primitive reflexes (palmomental, snout, glabellar) 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002803 Congenital contractures 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003577 Onset at birth 
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 HP:0005484 Microcephaly, postnatal 
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 HP:0006829 Severe muscular hypotonia "A severe degree of muscular hypotonia characterized by markedly reduced muscle tone." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000179085 DPM3 / Q9P2X0 / dolichyl-phosphate mannosyltransferase subunit 3  / complex
 ENSG00000000419 DPM1 / O60762 / dolichyl-phosphate mannosyltransferase subunit 1, catalytic  / complex






 

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