ENSG00000140386


Homo sapiens

Features
Gene ID: ENSG00000140386
  
Biological name :SCAPER
  
Synonyms : Q9BY12 / SCAPER / S-phase cyclin A associated protein in the ER
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q24.3
Gene start: 76347904
Gene end: 76905444
  
Corresponding Affymetrix probe sets: 209741_x_at (Human Genome U133 Plus 2.0 Array)   215848_at (Human Genome U133 Plus 2.0 Array)   216399_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000457434
Ensembl peptide - ENSP00000457234
Ensembl peptide - ENSP00000457382
Ensembl peptide - ENSP00000326924
Ensembl peptide - ENSP00000442190
Ensembl peptide - ENSP00000454973
Ensembl peptide - ENSP00000455231
Ensembl peptide - ENSP00000455378
Ensembl peptide - ENSP00000455623
Ensembl peptide - ENSP00000455751
Ensembl peptide - ENSP00000456065
Ensembl peptide - ENSP00000456508
Ensembl peptide - ENSP00000456987
NCBI entrez gene - 49855     See in Manteia.
OMIM - 611611
RefSeq - XM_017022284
RefSeq - XM_017022268
RefSeq - XM_017022269
RefSeq - XM_017022270
RefSeq - XM_017022271
RefSeq - XM_017022272
RefSeq - XM_017022273
RefSeq - XM_017022274
RefSeq - XM_017022275
RefSeq - XM_017022276
RefSeq - XM_017022277
RefSeq - XM_017022278
RefSeq - XM_017022279
RefSeq - XM_017022280
RefSeq - XM_017022281
RefSeq - XM_017022282
RefSeq - XM_017022283
RefSeq - NM_001145923
RefSeq - NM_001353009
RefSeq - NM_001353010
RefSeq - NM_001353012
RefSeq - NM_020843
RefSeq - XM_005254417
RefSeq - XM_005254419
RefSeq - XM_011521650
RefSeq - XM_011521652
RefSeq - XM_011521653
RefSeq - XM_011521654
RefSeq - XM_011521656
RefSeq - XM_017022266
RefSeq - XM_017022267
RefSeq Peptide - NP_065894
RefSeq Peptide - NP_001339939
RefSeq Peptide - NP_001339941
RefSeq Peptide - NP_001139395
RefSeq Peptide - NP_001339938
swissprot - H3BT27
swissprot - H3BTL8
swissprot - H3BTY2
swissprot - H3BPM0
swissprot - Q9BY12
swissprot - H3BPB0
swissprot - H3BU24
swissprot - H3BQ61
swissprot - H3BQF3
swissprot - H3BR40
swissprot - H3BS25
Ensembl - ENSG00000140386
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scaperENSDARG00000023104Danio rerio
 SCAPERENSGALG00000002883Gallus gallus
 ScaperENSMUSG00000034007Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR032446  S phase cyclin A-associated protein in the endoplasmic reticulum, N-terminal
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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