ENSG00000148600


Homo sapiens

Features
Gene ID: ENSG00000148600
  
Biological name :CDHR1
  
Synonyms : cadherin related family member 1 / CDHR1 / Q96JP9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: q23.1
Gene start: 84194635
Gene end: 84219621
  
Corresponding Affymetrix probe sets: 1555019_at (Human Genome U133 Plus 2.0 Array)   213369_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000485460
Ensembl peptide - ENSP00000331063
Ensembl peptide - ENSP00000485478
Ensembl peptide - ENSP00000361189
Ensembl peptide - ENSP00000485245
Ensembl peptide - ENSP00000485151
NCBI entrez gene - 92211     See in Manteia.
OMIM - 609502
RefSeq - NM_033100
RefSeq - XM_011540340
RefSeq - XM_011540339
RefSeq - XM_011540338
RefSeq - XM_011540337
RefSeq - NM_001171971
RefSeq Peptide - NP_001165442
RefSeq Peptide - NP_149091
swissprot - A0A096LP91
swissprot - Q96JP9
swissprot - F1T0L2
swissprot - A0A096LNP9
swissprot - A0A096LNV6
swissprot - A0A0A6YYA3
Ensembl - ENSG00000148600
  
Related genetic diseases (OMIM): 613660 - Cone-rod dystrophy 15, 613660
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CDHR1 (1 of many)ENSDARG00000104756Danio rerio
 cdhr1aENSDARG00000004643Danio rerio
 CDHR1ENSGALG00000002314Gallus gallus
 Cdhr1ENSMUSG00000021803Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDHR2 / Q9BYE9 / cadherin related family member 2ENSG0000007427626


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0008594 photoreceptor cell morphogenesis IMP
 biological_processGO:0009987 cellular process IEA
 biological_processGO:0035845 photoreceptor cell outer segment organization IMP
 biological_processGO:0045494 photoreceptor cell maintenance IMP
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0042622 photoreceptor outer segment membrane IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000529 Progressive visual loss 
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 HP:0000548 Cone-rod dystrophy 
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 HP:0000551 Abnormal color vision 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000662 Night blindness 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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