ENSG00000152217


Homo sapiens

Features
Gene ID: ENSG00000152217
  
Biological name :SETBP1
  
Synonyms : Q9Y6X0 / SET binding protein 1 / SETBP1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: 1
Band: q12.3
Gene start: 44680173
Gene end: 45068510
  
Corresponding Affymetrix probe sets: 205933_at (Human Genome U133 Plus 2.0 Array)   227478_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000282030
Ensembl peptide - ENSP00000390687
Ensembl peptide - ENSP00000468506
Ensembl peptide - ENSP00000496513
NCBI entrez gene - 26040     See in Manteia.
OMIM - 611060
RefSeq - NM_001130110
RefSeq - NM_015559
RefSeq Peptide - NP_001123582
RefSeq Peptide - NP_056374
swissprot - Q9Y6X0
swissprot - K7ES17
Ensembl - ENSG00000152217
  
Related genetic diseases (OMIM): 269150 - Schinzel-Giedion midface retraction syndrome, 269150
  616078 - Mental retardation, autosomal dominant 29, 616078
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 setbp1ENSDARG00000093799Danio rerio
 SETBP1ENSGALG00000036775Gallus gallus
 Q9Z180ENSMUSG00000024548Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NSD1 / Q96L73 / nuclear receptor binding SET domain protein 1ENSG0000016567112
ASH1L / Q9NR48 / ASH1 like histone lysine methyltransferaseENSG0000011653911
SETD2 / Q9BYW2 / SET domain containing 2ENSG0000018155511
NSD2 / O96028 / nuclear receptor binding SET domain protein 2ENSG000001096859
NSD3 / Q9BZ95 / nuclear receptor binding SET domain protein 3ENSG000001475488
EHMT1 / Q9H9B1 / euchromatic histone lysine methyltransferase 1ENSG000001810908
EHMT2 / Q96KQ7 / euchromatic histone lysine methyltransferase 2ENSG000002043717
Q15047 / SETDB1 / SET domain bifurcated 1ENSG000001433796
EZH2 / Q15910 / enhancer of zeste 2 polycomb repressive complex 2 subunitENSG000001064625
EZH1 / Q92800 / enhancer of zeste 1 polycomb repressive complex 2 subunitENSG000001087995
Q96T68 / SETDB2 / SET domain bifurcated 2ENSG000001361695
O43463 / SUV39H1 / suppressor of variegation 3-9 homolog 1ENSG000001019454
Q9H5I1 / SUV39H2 / suppressor of variegation 3-9 homolog 2ENSG000001524554
Q53H47 / SETMAR / SET domain and mariner transposase fusion geneENSG000001703644


Protein motifs (from Interpro)
Interpro ID Name
 IPR017956  AT hook, DNA-binding motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0016604 nuclear body IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISM
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000046 Scrotal hypoplasia 
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000059 Hypoplastic labia majora 
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 HP:0000064 Hypoplastic labia minora 
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 HP:0000071 Ureteral stenosis 
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 HP:0000072 Hydroureter "The distention of the ureter with urine." [HPO:curators]
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 HP:0000126 Hydronephrosis 
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 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
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 HP:0000189 Narrow palate "Width of the palate more than 2 SD below the mean (objective) or apparently decreased palatal width (subjective)." [pmid:19125428]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000219 Thin upper lip 
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000276 Long face 
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 HP:0000280 Coarse facial features 
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 HP:0000307 Pointed chin 
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 HP:0000316 Hypertelorism 
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 HP:0000329 Facial hemangioma "Hemangioma, a benign tumor of the vascular endothelial cells, occurring in the face." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000452 Choanal stenosis "Abnormal narrowing of the choana (the posterior nasal aperture)." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000470 Short neck 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000586 Shallow orbits 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000678 Dental overcrowding 
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 HP:0000813 Bicornuate uterus 
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 HP:0000879 Short sternum 
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 HP:0000885 Broad ribs 
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 HP:0000890 Long clavicles 
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 HP:0000935 Thickened cortex of long bones "Abnormal thickening of the cortex of long bones." [HPO:curators]
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 HP:0000954 Transverse palmar creases "The presence of a single palmar crease (instead of the two palmar creases that are typically present)." [HPO:curators]
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 HP:0000998 Hypertrichosis "Hypertrichosis is increased hair growth that is abnormal in quantity or location." [HPO:curators]
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001270 Motor retardation 
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 HP:0001344 Absent speech development 
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 HP:0001508 Failure to thrive 
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001739 Abnormality of the nasopharynx 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001795 Hyperconvex nails "Fingernails or toenails that show an exaggeratedly convex form." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002179 Opisthotonus 
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 HP:0002521 Hypsarrhythmia "Hypsarrhythmia is abnormal interictal high amplitude waves and a background of irregular spikes demonstrated by electroencephalography (EEG)." [HPO:curators]
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 HP:0002557 Hypoplastic nipples 
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 HP:0002645 Wormian bones 
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 HP:0002694 Sclerotic skull base 
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 HP:0002884 Hepatoblastoma 
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 HP:0002982 Tibial bowing "A developmental defect with posteromedial tibial angulation." [HPO:curators]
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0004492 Widely patent fontanels and sutures "An abnormally increased width of the cranial sutures of striking degree." [HPO:curators]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005495 Metopic suture extends to nasal root 
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 HP:0006387 Wide distal metaphysis of femur 
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 HP:0006392 Increased density of long bones "An abnormal increase in the bone density of the long bones." [HPO:curators]
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 HP:0006657 Hypoplasia of first ribs 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0008897 Growth retardation, progressive 
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 HP:0009104 Aplasia/Hypoplasia of the pubic bone 
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 HP:0009792 Teratoma "Teratomas are germ-cell tumors commonly composed of multiple cell types derived from one or more of the three germ layers." [HPO:curators]
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 HP:0009882 Hypoplasia of the distal phalanges of the hand 
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 HP:0010034 Hypoplastic/short 1st metacarpal "In contrast to the proximal phalanges of the digits 2-5, the proximal phalanx of the thumb is embryologically equivalent to the middle phalanges of the other digits, whereas the first metacarpal is embryologically of phalangeal origin and as such equivalent to the proximal phalanges of the other digits." [HPO:curators]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0030736 Sacrococcygeal teratoma "A teratoma arising in the sacro-coccygeal region." [] {comment="UToronto:chum"}
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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