ENSG00000169976


Homo sapiens

Features
Gene ID: ENSG00000169976
  
Biological name :SF3B5
  
Synonyms : Q9BWJ5 / SF3B5 / splicing factor 3b subunit 5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: q24.2
Gene start: 144094881
Gene end: 144095573
  
Corresponding Affymetrix probe sets: 221263_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000356541
NCBI entrez gene - 83443     See in Manteia.
OMIM - 617847
RefSeq - NM_031287
RefSeq Peptide - NP_112577
swissprot - Q9BWJ5
Ensembl - ENSG00000169976
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3b5ENSDARG00000016855Danio rerio
 SF3B5ENSGALG00000030824Gallus gallus
 Sf3b5ENSMUSG00000078348Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009846  Splicing factor 3B subunit 5/RDS3 complex subunit 10
 IPR017089  Splicing factor 3B, subunit 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IDA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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