ENSG00000171817


Homo sapiens

Features
Gene ID: ENSG00000171817
  
Biological name :ZNF540
  
Synonyms : Q8NDQ6 / zinc finger protein 540 / ZNF540
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: q13.12
Gene start: 37551406
Gene end: 37614097
  
Corresponding Affymetrix probe sets: 238454_at (Human Genome U133 Plus 2.0 Array)   242697_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000468113
Ensembl peptide - ENSP00000343768
Ensembl peptide - ENSP00000324598
Ensembl peptide - ENSP00000467118
Ensembl peptide - ENSP00000467667
Ensembl peptide - ENSP00000465503
Ensembl peptide - ENSP00000466274
NCBI entrez gene - 163255     See in Manteia.
OMIM - 613903
RefSeq - NM_152606
RefSeq - NM_001172225
RefSeq - NM_001172226
RefSeq Peptide - NP_001165696
RefSeq Peptide - NP_689819
RefSeq Peptide - NP_001165697
swissprot - Q8NDQ6
swissprot - K7EK80
swissprot - K7EQ46
swissprot - K7ER55
Ensembl - ENSG00000171817
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ZFP14 / Q9HCL3 / ZFP14 zinc finger proteinENSG0000014206548
Q7Z3V5 / ZNF571 / zinc finger protein 571ENSG0000018047948
ZFP30 / Q9Y2G7 / ZFP30 zinc finger proteinENSG0000012078447
ZFP82 / Q8N141 / ZFP82 zinc finger proteinENSG0000018100746
Q8N7M2 / ZNF283 / zinc finger protein 283ENSG0000016763744
Q6PG37 / ZNF790 / zinc finger protein 790ENSG0000019786344
Q8N9K5 / ZNF565 / zinc finger protein 565ENSG0000019635743
Q8TAF7 / ZNF461 / zinc finger protein 461ENSG0000019780842
Q96ND8 / ZNF583 / zinc finger protein 583ENSG0000019844041
Q9NQX6 / ZNF331 / zinc finger protein 331ENSG0000013084440
Q8NA42 / ZNF383 / zinc finger protein 383ENSG0000018828340
Q8NB42 / ZNF527 / zinc finger protein 527ENSG0000018916440
Q96NG8 / ZNF582 / zinc finger protein 582ENSG0000001886939
Q494X3 / ZNF404 / zinc finger protein 404ENSG0000017622239
Q9BX82 / ZNF471 / zinc finger protein 471ENSG0000019626339
ZFP28 / Q8NHY6 / ZFP28 zinc finger proteinENSG0000019686739
Q14585 / ZNF345 / zinc finger protein 345ENSG0000025124739
Q8N9F8 / ZNF454 / zinc finger protein 454ENSG0000017818737
ZNF74 / Q16587 / zinc finger protein 74ENSG0000018525235
P52738 / ZNF140 / zinc finger protein 140ENSG0000019638735


Protein motifs (from Interpro)
Interpro ID Name
 IPR001909  Krueppel-associated box
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR036051  KRAB domain superfamily
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0017148 negative regulation of translation IMP
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0000900 translation repressor activity, mRNA regulatory element binding IMP
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Generic Transcription Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr