ENSG00000177409


Homo sapiens

Features
Gene ID: ENSG00000177409
  
Biological name :SAMD9L
  
Synonyms : Q8IVG5 / SAMD9L / sterile alpha motif domain containing 9 like
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q21.2
Gene start: 93130055
Gene end: 93148369
  
Corresponding Affymetrix probe sets: 226603_at (Human Genome U133 Plus 2.0 Array)   230036_at (Human Genome U133 Plus 2.0 Array)   235643_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000410062
Ensembl peptide - ENSP00000408796
Ensembl peptide - ENSP00000484397
Ensembl peptide - ENSP00000326247
Ensembl peptide - ENSP00000391387
Ensembl peptide - ENSP00000391699
Ensembl peptide - ENSP00000396137
Ensembl peptide - ENSP00000405760
NCBI entrez gene - 219285     See in Manteia.
OMIM - 611170
RefSeq - XM_017011823
RefSeq - NM_001303496
RefSeq - NM_001303497
RefSeq - NM_001303498
RefSeq - NM_001303500
RefSeq - NM_001350083
RefSeq - NM_152703
RefSeq - XM_005250193
RefSeq - XM_006715890
RefSeq - XM_011515903
RefSeq - XM_017011822
RefSeq Peptide - NP_001337011
RefSeq Peptide - NP_001337012
RefSeq Peptide - NP_001337013
RefSeq Peptide - NP_001337014
RefSeq Peptide - NP_689916
RefSeq Peptide - NP_001290427
RefSeq Peptide - NP_001290429
RefSeq Peptide - NP_001290425
RefSeq Peptide - NP_001290426
swissprot - Q8IVG5
swissprot - A0A0B4J1Y6
Ensembl - ENSG00000177409
  
Related genetic diseases (OMIM): 159550 - Ataxia-pancytopenia syndrome, 159550
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SAMD9ENSDARG00000102729Danio rerio
 ENSGALG00000009479Gallus gallus
 Samd9lENSMUSG00000047735Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SAMD9 / Q5K651 / sterile alpha motif domain containing 9ENSG0000020541360


Protein motifs (from Interpro)
Interpro ID Name
 IPR001660  Sterile alpha motif domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013761  Sterile alpha motif/pointed domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0034058 endosomal vesicle fusion IBA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000762 Decreased nerve conduction velocities 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001310 Dysmetria 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001874 Abnormality of neutrophil 
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 HP:0001876 Pancytopenia 
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 HP:0001908 Hypoplastic anemia 
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 HP:0002166 Decreased vibratory sense in the lower limbs "A decrease in the ability to perceive vibration in the legs." [HPO:curators]
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 HP:0002167 Neurological speech impairment 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002317 Unsteady gait 
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 HP:0002500 Abnormality of the cerebral white matter 
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 HP:0002936 Distal sensory impairment 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003828 Variable expressivity 
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 HP:0004311 Abnormality of macrophages 
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 HP:0004313 Reduced immunoglobulin levels 
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 HP:0004820 Acute myelomonocytic leukemia 
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 HP:0006801 Hyperactive deep tendon reflexes 
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0011448 Ankle clonus "Clonus is an involuntary tendon reflex that causes repeated flexion and extension of the foot. Ankle clonus is tested by rapidly flexing the foot upward." [HPO:probinson]
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 HP:0011869 Abnormal platelet function "Any anomaly in the function of thrombocytes." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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