ENSG00000242110


Homo sapiens

Features
Gene ID: ENSG00000242110
  
Biological name :AMACR
  
Synonyms : alpha-methylacyl-CoA racemase / AMACR / Q9UHK6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: p13.2
Gene start: 33986178
Gene end: 34008108
  
Corresponding Affymetrix probe sets: 209424_s_at (Human Genome U133 Plus 2.0 Array)   209425_at (Human Genome U133 Plus 2.0 Array)   209426_s_at (Human Genome U133 Plus 2.0 Array)   217111_at (Human Genome U133 Plus 2.0 Array)   217113_at (Human Genome U133 Plus 2.0 Array)   236365_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000476965
Ensembl peptide - ENSP00000477411
Ensembl peptide - ENSP00000477108
Ensembl peptide - ENSP00000334424
Ensembl peptide - ENSP00000371504
Ensembl peptide - ENSP00000371517
Ensembl peptide - ENSP00000424351
Ensembl peptide - ENSP00000427227
NCBI entrez gene - 23600     See in Manteia.
OMIM - 604489
RefSeq - NM_001167595
RefSeq - NM_014324
RefSeq - NM_203382
RefSeq Peptide - NP_055139
RefSeq Peptide - NP_001161067
RefSeq Peptide - NP_976316
swissprot - V9GZ45
swissprot - Q9UHK6
swissprot - V9GYP4
swissprot - V9GYU9
swissprot - D6RB81
Ensembl - ENSG00000242110
  
Related genetic diseases (OMIM): 214950 - Bile acid synthesis defect, congenital, 4, 214950
  614307 - Alpha-methylacyl-CoA racemase deficiency, 614307
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 amacrENSDARG00000057435Danio rerio
 AMACRENSGALG00000003326Gallus gallus
 AmacrENSMUSG00000022244Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SUGCT / Q9HAC7 / succinyl-CoA:glutarate-CoA transferaseENSG0000017560024


Protein motifs (from Interpro)
Interpro ID Name
 IPR003673  CoA-transferase family III
 IPR008948  L-Aspartase-like
 IPR022761  Fumarate lyase, N-terminal
 IPR023606  CoA-transferase family III domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006631 fatty acid metabolic process IEA
 biological_processGO:0006699 bile acid biosynthetic process IEA
 biological_processGO:0008206 bile acid metabolic process IDA
 biological_processGO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase TAS
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005777 peroxisome IEA
 cellular_componentGO:0005782 peroxisomal matrix TAS
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0005102 signaling receptor binding IPI
 molecular_functionGO:0008111 alpha-methylacyl-CoA racemase activity TAS
 molecular_functionGO:0016853 isomerase activity IEA


Pathways (from Reactome)
Pathway description
Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol
Synthesis of bile acids and bile salts via 24-hydroxycholesterol
Beta-oxidation of pristanoyl-CoA
Peroxisomal protein import


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000815 Hypergonadotropic hypogonadism "Reduced function of the gonads (testes in males or ovaries in females) associated with excess pituitary gonadotropin secretion and resulting in delayed sexual development and growth delay." [HPO:curators]
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 HP:0001080 Biliary tract abnormality 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001298 Encephalopathy 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001394 Cirrhosis 
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 HP:0001396 Cholestasis 
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 HP:0001399 Hepatic failure 
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 HP:0001406 Intrahepatic cholestasis 
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 HP:0001508 Failure to thrive 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002076 Migraine 
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 HP:0002133 Status epilepticus 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002630 Fat malabsorption 
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 HP:0002904 Hyperbilirubinemia 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003256 Abnormalities of the clotting factors 
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 HP:0003623 Onset in neonatal period 
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 HP:0003812 Phenotypic variability 
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0006579 Prolonged neonatal jaundice 
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 HP:0007141 Sensorimotor neuropathy 
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 HP:0007598 Bilateral single palmar creases 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0200084 Giant cell hepatitis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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