ENSGALG00000002942


Gallus gallus

Features
Gene ID: ENSGALG00000002942
  
Biological name :JMJD1C
  
Synonyms : JMJD1C / jumonji domain containing 1C
  
Possible biological names infered from orthology : Probable JmjC domain-containing histone demethylation protein 2C / Q15652 / Q69ZK6
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 7841428
Gene end: 7988525
  
Corresponding Affymetrix probe sets: Gga.15255.1.S1_s_at (Chicken Array)   Gga.15746.1.S1_at (Chicken Array)   Gga.16226.1.S1_s_at (Chicken Array)   GgaAffx.1876.1.S1_s_at (Chicken Array)   GgaAffx.25692.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000043975
Ensembl peptide - ENSGALP00000048978
Ensembl peptide - ENSGALP00000045942
Ensembl peptide - ENSGALP00000004639
NCBI entrez gene - 423655     See in Manteia.
RefSeq - XM_015288104
RefSeq - NM_001199546
RefSeq - XM_015288100
RefSeq - XM_015288101
RefSeq - XM_015288102
RefSeq - XM_015288103
RefSeq Peptide - NP_001186475
swissprot - A0A1D5P8D2
swissprot - A0A1D5NZX2
swissprot - F1N9P6
swissprot - A0A1D5NUF8
Ensembl - ENSGALG00000002942
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 jmjd1cbENSDARG00000079939Danio rerio
 JMJD1CENSG00000171988Homo sapiens
 Jmjd1cENSMUSG00000037876Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
KDM3B / lysine demethylase 3B / Q7LBC6*ENSGALG0000000766325
KDM3A / lysine-specific demethylase 3A / Q6PCM1* / Q9Y4C1* / lysine demethylase 3A*ENSGALG0000001580319


Protein motifs (from Interpro)
Interpro ID Name
 IPR003347  JmjC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0033169 histone H3-K9 demethylation IBA
 cellular_componentGO:0000785 chromatin IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0031490 chromatin DNA binding IBA
 molecular_functionGO:0032454 histone demethylase activity (H3-K9 specific) IBA


Pathways (from Reactome)
Pathway description
Factors involved in megakaryocyte development and platelet production


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000020078 H3F3C / histone H3.2 / H3.Y* / H3F3B* / H3F3A* / Q6NXT2* / P84243* / P84244* / Histone H3.3 * / H3 histone family member 3B* / H3 histone family member 3A* / H3 histone family member 3C* /...  / reaction
 ENSGALG00000043062 P84229 / HIST2H3D / Histone H3.2 / Q71DI3* / histone cluster 2 H3 family member d*  / reaction






 

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