ENSGALG00000003130


Gallus gallus

Features
Gene ID: ENSGALG00000003130
  
Biological name :DDX49
  
Synonyms : DDX49 / probable ATP-dependent RNA helicase DDX49
  
Possible biological names infered from orthology : DEAD-box helicase 49 / Q4FZF3 / Q9Y6V7
  
Species: Gallus gallus
  
Chr. number: 28
Strand: -1
Band:
Gene start: 3733488
Gene end: 3739178
  
Corresponding Affymetrix probe sets: Gga.18007.1.S1_at (Chicken Array)   GgaAffx.11929.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000004940
Ensembl peptide - ENSGALP00000064343
Ensembl peptide - ENSGALP00000057082
NCBI entrez gene - 420116     See in Manteia.
RefSeq - NM_001030938
RefSeq - XM_015300051
RefSeq Peptide - NP_001026109
swissprot - A0A1L1RZP4
swissprot - A0A1D5PVV4
swissprot - F1NA53
Ensembl - ENSGALG00000003130
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx49ENSDARG00000012899Danio rerio
 DDX49ENSG00000105671Homo sapiens
 Ddx49ENSMUSG00000057788Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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