ENSGALG00000003217


Gallus gallus
membraneLITAFcytoplasmicsidebindingfactorregulationresponselipopolysaccharidernapolymeraseiilysosomalplasmaendosomelps-inducedtumournecrosisalphacytokineproductiontranscriptioncellularnucleoplasmgolgiapparatuscytosolintracellularmembrane-boundedorganelleearly

Features
Gene ID: ENSGALG00000003217
  
Biological name :LITAF
  
Synonyms : lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog / LITAF
  
Possible biological names infered from orthology : lipopolysaccharide induced TNF factor / Q99732 / Q9JLJ0
  
Species: Gallus gallus
  
Chr. number: 14
Strand: 1
Band:
Gene start: 926664
Gene end: 933480
  
Corresponding Affymetrix probe sets: Gga.3383.1.S1_at (Chicken Array)   Gga.3383.1.S2_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005086
NCBI entrez gene - 374125     See in Manteia.
RefSeq - XM_015294124
RefSeq - NM_204267
RefSeq - XM_015294122
RefSeq - XM_015294123
RefSeq - XM_015294117
RefSeq - XM_015294118
RefSeq - XM_015294119
RefSeq - XM_015294120
RefSeq - XM_015294121
RefSeq Peptide - NP_989598
swissprot - F1NNL3
Ensembl - ENSGALG00000003217
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 litafENSDARG00000103483Danio rerio
 LITAFENSG00000189067Homo sapiens
 LitafENSMUSG00000022500Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDIP1 / cell death inducing p53 target 1 / Q9DB75* / Q9H305* / Mus musculus cell death inducing Trp53 target 1 (Cdip1), transcript variant 5, mRNA.*ENSGALG0000003650232
Gm5767* / AC022167.5* / predicted 5767 *ENSGALG0000003422216


Protein motifs (from Interpro)
Interpro ID Name
 IPR006629  LPS-induced tumour necrosis factor alpha factor


Gene Ontology (GO)
cytokine productionresponse to external stimulusresponse to chemicalresponse to biotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular response to stimuluscytokine productionresponse to external stimulusresponse to chemicalresponse to biotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular response to stimuluscytokine productionresponse to external stimulusresponse to chemicalresponse to biotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular response to stimuluscytokine productionresponse to external stimulusresponse to chemicalresponse to biotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular response to stimuluscytokine productionresponse to external stimulusresponse to chemicalresponse to biotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular response to stimuluscytokine productionresponse to external stimulusresponse to chemicalresponse to biotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular response to stimuluscytokine productionresponse to external stimulusresponse to chemicalresponse to biotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular response to stimuluscytokine productionresponse to external stimulusresponse to chemicalresponse to biotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular response to stimuluscytokine productionresponse to external stimulusresponse to chemicalresponse to biotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular response to stimuluscytokine productionresponse to external stimulusresponse to chemicalresponse to biotic stimulusnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular response to stimuluscytokine producytokine productionresponse to exresponse to external stimulusresponse to chresponse to chemicalresponse to biresponse to biotic stimulusnitrogen componitrogen compound metabolic processbiosynthetic pbiosynthetic processcellular metabcellular metabolic processprimary metaboprimary metabolic processorganic substaorganic substance metabolic processcellular respocellular response to stimulus
organic cyclic compound bindingheterocyclic compound bindingion bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingprotein bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound bindingion bindingion bindingprotein bindingprotein binding
cellorganellemembrane-enclosed lumenmembranecellorganellemembrane-enclosed lumenmembranecellorganellemembrane-enclosed lumenmembranecellorganellemembrane-enclosed lumenmembranecellorganellemembrane-enclosed lumenmembranecellorganellemembrane-enclosed lumenmembranecellorganellemembrane-enclosed lumenmembranecellorganellemembrane-enclosed lumenmembranecellorganellemembrane-enclosed lumenmembranecellorganellemembrane-enclosed lumenmembranecellcellorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumenmembranemembrane
TypeGO IDTermEv.Code
 biological_processGO:0001817 regulation of cytokine production IEA
 biological_processGO:0032496 response to lipopolysaccharide IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0071222 cellular response to lipopolysaccharide IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005765 lysosomal membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0009898 cytoplasmic side of plasma membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0098559 cytoplasmic side of early endosome membrane IEA
 cellular_componentGO:0098560 cytoplasmic side of late endosome membrane IEA
 cellular_componentGO:0098574 cytoplasmic side of lysosomal membrane IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0050699 WW domain binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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